07 Apr 2023 12:53:21,649 DEBUG: Resetting Job ID: b45ba3e3-b7ab-103b-a13f-fea6ddf5751c
07 Apr 2023 12:53:21,668 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
07 Apr 2023 12:53:21,670 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-04-07_15-53-07.sky.zip
07 Apr 2023 12:53:21,670 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd
07 Apr 2023 12:53:22,806 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky
07 Apr 2023 12:53:22,830 INFO : 2% Done
07 Apr 2023 12:53:23,167 DEBUG: Starting to load chromatogram headers
07 Apr 2023 12:53:23,179 DEBUG: Done loading chromatogram headers
07 Apr 2023 12:53:23,541 INFO : Inserting Precursors_Mix_1
07 Apr 2023 12:53:23,550 INFO : 4% Done
07 Apr 2023 12:53:23,623 INFO : 7% Done
07 Apr 2023 12:53:23,696 INFO : 10% Done
07 Apr 2023 12:53:23,769 INFO : 12% Done
07 Apr 2023 12:53:23,859 INFO : 14% Done
07 Apr 2023 12:53:23,950 INFO : 17% Done
07 Apr 2023 12:53:24,025 INFO : 19% Done
07 Apr 2023 12:53:24,118 INFO : 22% Done
07 Apr 2023 12:53:24,203 INFO : 25% Done
07 Apr 2023 12:53:24,292 INFO : 27% Done
07 Apr 2023 12:53:24,388 INFO : 29% Done
07 Apr 2023 12:53:24,463 INFO : 32% Done
07 Apr 2023 12:53:24,553 INFO : 35% Done
07 Apr 2023 12:53:24,632 INFO : 37% Done
07 Apr 2023 12:53:24,706 INFO : 40% Done
07 Apr 2023 12:53:24,785 INFO : 43% Done
07 Apr 2023 12:53:24,868 INFO : 45% Done
07 Apr 2023 12:53:24,948 INFO : 47% Done
07 Apr 2023 12:53:25,042 INFO : 50% Done
07 Apr 2023 12:53:25,153 INFO : 53% Done
07 Apr 2023 12:53:25,279 INFO : 55% Done
07 Apr 2023 12:53:25,398 INFO : 58% Done
07 Apr 2023 12:53:25,517 INFO : 60% Done
07 Apr 2023 12:53:25,629 DEBUG: Total molecules inserted: 23
07 Apr 2023 12:53:25,630 INFO : Done parsing Skyline document.
07 Apr 2023 12:53:25,685 INFO : No group comparisons found.
07 Apr 2023 12:53:25,685 INFO : Calculating calibration curves
07 Apr 2023 12:53:25,686 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1
07 Apr 2023 12:53:25,962 INFO : 68% Done
07 Apr 2023 12:53:25,966 INFO : Done calculating calibration curves.
07 Apr 2023 12:53:25,987 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 79
07 Apr 2023 12:53:25,996 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 79
07 Apr 2023 12:53:25,998 INFO : 69% Done
07 Apr 2023 12:53:26,006 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 79
07 Apr 2023 12:53:26,014 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 79
07 Apr 2023 12:53:26,015 INFO : 70% Done
07 Apr 2023 12:53:26,023 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 5 of 79
07 Apr 2023 12:53:26,030 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 6 of 79
07 Apr 2023 12:53:26,036 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 7 of 79
07 Apr 2023 12:53:26,038 INFO : 71% Done
07 Apr 2023 12:53:26,045 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 8 of 79
07 Apr 2023 12:53:26,052 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 9 of 79
07 Apr 2023 12:53:26,059 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 10 of 79
07 Apr 2023 12:53:26,060 INFO : 72% Done
07 Apr 2023 12:53:26,068 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 11 of 79
07 Apr 2023 12:53:26,076 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 12 of 79
07 Apr 2023 12:53:26,077 INFO : 73% Done
07 Apr 2023 12:53:26,084 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 13 of 79
07 Apr 2023 12:53:26,091 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 14 of 79
07 Apr 2023 12:53:26,098 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 15 of 79
07 Apr 2023 12:53:26,099 INFO : 74% Done
07 Apr 2023 12:53:26,107 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 16 of 79
07 Apr 2023 12:53:26,114 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 17 of 79
07 Apr 2023 12:53:26,115 INFO : 75% Done
07 Apr 2023 12:53:26,121 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 18 of 79
07 Apr 2023 12:53:26,129 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 19 of 79
07 Apr 2023 12:53:26,136 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 20 of 79
07 Apr 2023 12:53:26,137 INFO : 76% Done
07 Apr 2023 12:53:26,144 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 21 of 79
07 Apr 2023 12:53:26,151 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 22 of 79
07 Apr 2023 12:53:26,158 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 23 of 79
07 Apr 2023 12:53:26,159 INFO : 77% Done
07 Apr 2023 12:53:26,166 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 24 of 79
07 Apr 2023 12:53:26,174 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\02_17_23_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 25 of 79
07 Apr 2023 12:53:26,175 INFO : 78% Done
07 Apr 2023 12:53:26,182 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 26 of 79
07 Apr 2023 12:53:26,190 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 27 of 79
07 Apr 2023 12:53:26,198 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 28 of 79
07 Apr 2023 12:53:26,199 INFO : 79% Done
07 Apr 2023 12:53:26,206 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 29 of 79
07 Apr 2023 12:53:26,213 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 30 of 79
07 Apr 2023 12:53:26,220 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 31 of 79
07 Apr 2023 12:53:26,221 INFO : 80% Done
07 Apr 2023 12:53:26,228 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 32 of 79
07 Apr 2023 12:53:26,235 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 33 of 79
07 Apr 2023 12:53:26,236 INFO : 81% Done
07 Apr 2023 12:53:26,243 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 34 of 79
07 Apr 2023 12:53:26,252 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 35 of 79
07 Apr 2023 12:53:26,259 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 36 of 79
07 Apr 2023 12:53:26,260 INFO : 82% Done
07 Apr 2023 12:53:26,267 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 37 of 79
07 Apr 2023 12:53:26,275 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 38 of 79
07 Apr 2023 12:53:26,282 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 39 of 79
07 Apr 2023 12:53:26,283 INFO : 83% Done
07 Apr 2023 12:53:26,290 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 40 of 79
07 Apr 2023 12:53:26,298 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 41 of 79
07 Apr 2023 12:53:26,299 INFO : 84% Done
07 Apr 2023 12:53:26,307 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 42 of 79
07 Apr 2023 12:53:26,314 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 43 of 79
07 Apr 2023 12:53:26,321 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 44 of 79
07 Apr 2023 12:53:26,322 INFO : 85% Done
07 Apr 2023 12:53:26,330 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 45 of 79
07 Apr 2023 12:53:26,337 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 46 of 79
07 Apr 2023 12:53:26,345 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 47 of 79
07 Apr 2023 12:53:26,346 INFO : 86% Done
07 Apr 2023 12:53:26,354 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 48 of 79
07 Apr 2023 12:53:26,361 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 49 of 79
07 Apr 2023 12:53:26,362 INFO : 87% Done
07 Apr 2023 12:53:26,369 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 50 of 79
07 Apr 2023 12:53:26,377 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 51 of 79
07 Apr 2023 12:53:26,378 INFO : 88% Done
07 Apr 2023 12:53:26,385 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 52 of 79
07 Apr 2023 12:53:26,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 53 of 79
07 Apr 2023 12:53:26,405 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 54 of 79
07 Apr 2023 12:53:26,416 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 55 of 79
07 Apr 2023 12:53:26,418 INFO : 89% Done
07 Apr 2023 12:53:26,430 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 56 of 79
07 Apr 2023 12:53:26,438 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 57 of 79
07 Apr 2023 12:53:26,439 INFO : 90% Done
07 Apr 2023 12:53:26,447 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 58 of 79
07 Apr 2023 12:53:26,455 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 59 of 79
07 Apr 2023 12:53:26,456 INFO : 91% Done
07 Apr 2023 12:53:26,463 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 60 of 79
07 Apr 2023 12:53:26,470 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 61 of 79
07 Apr 2023 12:53:26,478 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 62 of 79
07 Apr 2023 12:53:26,485 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 63 of 79
07 Apr 2023 12:53:26,486 INFO : 92% Done
07 Apr 2023 12:53:26,493 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 64 of 79
07 Apr 2023 12:53:26,501 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 65 of 79
07 Apr 2023 12:53:26,502 INFO : 93% Done
07 Apr 2023 12:53:26,510 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 66 of 79
07 Apr 2023 12:53:26,517 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 67 of 79
07 Apr 2023 12:53:26,518 INFO : 94% Done
07 Apr 2023 12:53:26,526 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 68 of 79
07 Apr 2023 12:53:26,533 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 69 of 79
07 Apr 2023 12:53:26,540 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 70 of 79
07 Apr 2023 12:53:26,542 INFO : 95% Done
07 Apr 2023 12:53:26,549 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 71 of 79
07 Apr 2023 12:53:26,556 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 72 of 79
07 Apr 2023 12:53:26,563 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 73 of 79
07 Apr 2023 12:53:26,565 INFO : 96% Done
07 Apr 2023 12:53:26,572 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 74 of 79
07 Apr 2023 12:53:26,579 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 75 of 79
07 Apr 2023 12:53:26,580 INFO : 97% Done
07 Apr 2023 12:53:26,587 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 76 of 79
07 Apr 2023 12:53:26,594 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 77 of 79
07 Apr 2023 12:53:26,602 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 78 of 79
07 Apr 2023 12:53:26,603 INFO : 98% Done
07 Apr 2023 12:53:26,610 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 79 of 79
07 Apr 2023 12:53:26,610 INFO : Done updating previously imported sample file data.
07 Apr 2023 12:53:27,827 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-02-17_12-34-46.sky.zip have been updated with newer data.
07 Apr 2023 12:53:27,827 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-02-17_12-34-46.sky.zip
07 Apr 2023 12:53:27,827 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-02-17_12-34-46
07 Apr 2023 12:53:27,827 INFO : Creating and populating temp tables for Proportion values
07 Apr 2023 12:53:27,919 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
07 Apr 2023 12:53:28,113 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
07 Apr 2023 12:53:28,180 INFO : Cleaning up temp tables
07 Apr 2023 12:53:28,181 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-04-07_15-53-07.sky.zip
07 Apr 2023 12:53:28,189 INFO : 100% Done
07 Apr 2023 12:53:28,213 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'