17 Feb 2023 09:19:26,502 DEBUG: Resetting Job ID: 24989a0c-9115-103b-b327-fea6ddf5f3bc

17 Feb 2023 09:19:26,518 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

17 Feb 2023 09:19:26,519 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-02-17_12-19-11.sky.zip

17 Feb 2023 09:19:26,519 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

17 Feb 2023 09:19:27,594 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

17 Feb 2023 09:19:27,680 INFO : 2% Done

17 Feb 2023 09:19:27,949 DEBUG: Starting to load chromatogram headers

17 Feb 2023 09:19:27,959 DEBUG: Done loading chromatogram headers

17 Feb 2023 09:19:28,327 INFO : Inserting Precursors_Mix_1

17 Feb 2023 09:19:28,335 INFO : 4% Done

17 Feb 2023 09:19:28,403 INFO : 7% Done

17 Feb 2023 09:19:28,471 INFO : 10% Done

17 Feb 2023 09:19:28,535 INFO : 12% Done

17 Feb 2023 09:19:28,598 INFO : 14% Done

17 Feb 2023 09:19:28,661 INFO : 17% Done

17 Feb 2023 09:19:28,726 INFO : 19% Done

17 Feb 2023 09:19:28,795 INFO : 22% Done

17 Feb 2023 09:19:28,881 INFO : 25% Done

17 Feb 2023 09:19:28,951 INFO : 27% Done

17 Feb 2023 09:19:29,019 INFO : 29% Done

17 Feb 2023 09:19:29,082 INFO : 32% Done

17 Feb 2023 09:19:29,150 INFO : 35% Done

17 Feb 2023 09:19:29,213 INFO : 37% Done

17 Feb 2023 09:19:29,274 INFO : 40% Done

17 Feb 2023 09:19:29,337 INFO : 43% Done

17 Feb 2023 09:19:29,401 INFO : 45% Done

17 Feb 2023 09:19:29,468 INFO : 47% Done

17 Feb 2023 09:19:29,572 INFO : 50% Done

17 Feb 2023 09:19:29,644 INFO : 53% Done

17 Feb 2023 09:19:29,710 INFO : 55% Done

17 Feb 2023 09:19:29,776 INFO : 58% Done

17 Feb 2023 09:19:29,842 INFO : 60% Done

17 Feb 2023 09:19:29,899 DEBUG: Total molecules inserted: 23

17 Feb 2023 09:19:29,901 INFO : Done parsing Skyline document.

17 Feb 2023 09:19:29,955 INFO : No group comparisons found.

17 Feb 2023 09:19:29,955 INFO : Calculating calibration curves

17 Feb 2023 09:19:29,956 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

17 Feb 2023 09:19:30,282 INFO : 68% Done

17 Feb 2023 09:19:30,285 INFO : Done calculating calibration curves.

17 Feb 2023 09:19:30,294 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 92

17 Feb 2023 09:19:30,301 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 92

17 Feb 2023 09:19:30,303 INFO : 69% Done

17 Feb 2023 09:19:30,310 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 92

17 Feb 2023 09:19:30,317 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 92

17 Feb 2023 09:19:30,324 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 92

17 Feb 2023 09:19:30,325 INFO : 70% Done

17 Feb 2023 09:19:30,335 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 92

17 Feb 2023 09:19:30,342 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 92

17 Feb 2023 09:19:30,349 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 92

17 Feb 2023 09:19:30,350 INFO : 71% Done

17 Feb 2023 09:19:30,357 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 92

17 Feb 2023 09:19:30,363 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 92

17 Feb 2023 09:19:30,370 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 92

17 Feb 2023 09:19:30,371 INFO : 72% Done

17 Feb 2023 09:19:30,379 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 92

17 Feb 2023 09:19:30,386 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 92

17 Feb 2023 09:19:30,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 92

17 Feb 2023 09:19:30,394 INFO : 73% Done

17 Feb 2023 09:19:30,401 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 92

17 Feb 2023 09:19:30,408 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 92

17 Feb 2023 09:19:30,415 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 92

17 Feb 2023 09:19:30,422 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 92

17 Feb 2023 09:19:30,423 INFO : 74% Done

17 Feb 2023 09:19:30,430 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 92

17 Feb 2023 09:19:30,437 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 92

17 Feb 2023 09:19:30,438 INFO : 75% Done

17 Feb 2023 09:19:30,445 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 92

17 Feb 2023 09:19:30,451 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 92

17 Feb 2023 09:19:30,458 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 92

17 Feb 2023 09:19:30,459 INFO : 76% Done

17 Feb 2023 09:19:30,466 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 92

17 Feb 2023 09:19:30,473 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 92

17 Feb 2023 09:19:30,480 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 92

17 Feb 2023 09:19:30,487 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 92

17 Feb 2023 09:19:30,488 INFO : 77% Done

17 Feb 2023 09:19:30,495 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 92

17 Feb 2023 09:19:30,501 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 92

17 Feb 2023 09:19:30,502 INFO : 78% Done

17 Feb 2023 09:19:30,509 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 92

17 Feb 2023 09:19:30,516 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 92

17 Feb 2023 09:19:30,523 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 92

17 Feb 2023 09:19:30,524 INFO : 79% Done

17 Feb 2023 09:19:30,531 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 92

17 Feb 2023 09:19:30,538 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 92

17 Feb 2023 09:19:30,545 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 92

17 Feb 2023 09:19:30,551 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 92

17 Feb 2023 09:19:30,552 INFO : 80% Done

17 Feb 2023 09:19:30,559 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 92

17 Feb 2023 09:19:30,566 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1_20220919185308.raw in QC folder. 38 of 92

17 Feb 2023 09:19:30,573 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 39 of 92

17 Feb 2023 09:19:30,574 INFO : 81% Done

17 Feb 2023 09:19:30,581 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 40 of 92

17 Feb 2023 09:19:30,588 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 41 of 92

17 Feb 2023 09:19:30,589 INFO : 82% Done

17 Feb 2023 09:19:30,595 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 42 of 92

17 Feb 2023 09:19:30,602 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 43 of 92

17 Feb 2023 09:19:30,609 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Blank1.raw in QC folder. 44 of 92

17 Feb 2023 09:19:30,616 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 45 of 92

17 Feb 2023 09:19:30,617 INFO : 83% Done

17 Feb 2023 09:19:30,624 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 46 of 92

17 Feb 2023 09:19:30,631 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\02_17_23_Blank1.raw in QC folder. 47 of 92

17 Feb 2023 09:19:30,638 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1.raw in QC folder. 48 of 92

17 Feb 2023 09:19:30,639 INFO : 84% Done

17 Feb 2023 09:19:30,645 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 49 of 92

17 Feb 2023 09:19:30,652 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 50 of 92

17 Feb 2023 09:19:30,659 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 51 of 92

17 Feb 2023 09:19:30,660 INFO : 85% Done

17 Feb 2023 09:19:30,667 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 52 of 92

17 Feb 2023 09:19:30,674 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 53 of 92

17 Feb 2023 09:19:30,681 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 54 of 92

17 Feb 2023 09:19:30,682 INFO : 86% Done

17 Feb 2023 09:19:30,689 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 55 of 92

17 Feb 2023 09:19:30,696 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 56 of 92

17 Feb 2023 09:19:30,702 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Blank2.raw in QC folder. 57 of 92

17 Feb 2023 09:19:30,703 INFO : 87% Done

17 Feb 2023 09:19:30,710 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 58 of 92

17 Feb 2023 09:19:30,717 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 59 of 92

17 Feb 2023 09:19:30,724 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 60 of 92

17 Feb 2023 09:19:30,725 INFO : 88% Done

17 Feb 2023 09:19:30,732 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 61 of 92

17 Feb 2023 09:19:30,739 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 62 of 92

17 Feb 2023 09:19:30,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank2.raw in QC folder. 63 of 92

17 Feb 2023 09:19:30,752 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 64 of 92

17 Feb 2023 09:19:30,753 INFO : 89% Done

17 Feb 2023 09:19:30,760 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 65 of 92

17 Feb 2023 09:19:30,767 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 66 of 92

17 Feb 2023 09:19:30,768 INFO : 90% Done

17 Feb 2023 09:19:30,775 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 67 of 92

17 Feb 2023 09:19:30,782 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 68 of 92

17 Feb 2023 09:19:30,788 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 69 of 92

17 Feb 2023 09:19:30,789 INFO : 91% Done

17 Feb 2023 09:19:30,796 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 70 of 92

17 Feb 2023 09:19:30,803 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 71 of 92

17 Feb 2023 09:19:30,810 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 72 of 92

17 Feb 2023 09:19:30,817 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 73 of 92

17 Feb 2023 09:19:30,818 INFO : 92% Done

17 Feb 2023 09:19:30,825 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 74 of 92

17 Feb 2023 09:19:30,831 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 75 of 92

17 Feb 2023 09:19:30,832 INFO : 93% Done

17 Feb 2023 09:19:30,839 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 76 of 92

17 Feb 2023 09:19:30,846 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 77 of 92

17 Feb 2023 09:19:30,853 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 78 of 92

17 Feb 2023 09:19:30,854 INFO : 94% Done

17 Feb 2023 09:19:30,861 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 79 of 92

17 Feb 2023 09:19:30,868 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 80 of 92

17 Feb 2023 09:19:30,875 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 81 of 92

17 Feb 2023 09:19:30,882 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 82 of 92

17 Feb 2023 09:19:30,883 INFO : 95% Done

17 Feb 2023 09:19:30,890 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 83 of 92

17 Feb 2023 09:19:30,898 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 84 of 92

17 Feb 2023 09:19:30,905 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 85 of 92

17 Feb 2023 09:19:30,906 INFO : 96% Done

17 Feb 2023 09:19:30,913 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 86 of 92

17 Feb 2023 09:19:30,921 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 87 of 92

17 Feb 2023 09:19:30,922 INFO : 97% Done

17 Feb 2023 09:19:30,929 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 88 of 92

17 Feb 2023 09:19:30,936 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 89 of 92

17 Feb 2023 09:19:30,944 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 90 of 92

17 Feb 2023 09:19:30,951 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 91 of 92

17 Feb 2023 09:19:30,952 INFO : 98% Done

17 Feb 2023 09:19:30,959 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 92 of 92

17 Feb 2023 09:19:30,959 INFO : Done updating previously imported sample file data.

17 Feb 2023 09:19:31,613 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-02-17_11-54-20.sky.zip have been updated with newer data.

17 Feb 2023 09:19:31,613 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-02-17_11-54-20.sky.zip

17 Feb 2023 09:19:31,613 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2023-02-17_11-54-20

17 Feb 2023 09:19:31,613 INFO : Creating and populating temp tables for Proportion values

17 Feb 2023 09:19:31,712 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

17 Feb 2023 09:19:31,906 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

17 Feb 2023 09:19:31,973 INFO : Cleaning up temp tables

17 Feb 2023 09:19:32,224 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2023-02-17_12-19-11.sky.zip

17 Feb 2023 09:19:32,227 INFO : 100% Done

17 Feb 2023 09:19:32,255 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'