27 Sep 2022 15:27:33,696 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Sep 2022 15:27:33,699 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-27-19.sky.zip

27 Sep 2022 15:27:33,699 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

27 Sep 2022 15:27:34,744 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

27 Sep 2022 15:27:34,834 INFO : 2% Done

27 Sep 2022 15:27:35,074 DEBUG: Starting to load chromatogram headers

27 Sep 2022 15:27:35,084 DEBUG: Done loading chromatogram headers

27 Sep 2022 15:27:35,485 INFO : Inserting Precursors_Mix_1

27 Sep 2022 15:27:35,493 INFO : 4% Done

27 Sep 2022 15:27:35,586 INFO : 7% Done

27 Sep 2022 15:27:35,670 INFO : 10% Done

27 Sep 2022 15:27:35,742 INFO : 12% Done

27 Sep 2022 15:27:35,818 INFO : 14% Done

27 Sep 2022 15:27:35,909 INFO : 17% Done

27 Sep 2022 15:27:35,988 INFO : 19% Done

27 Sep 2022 15:27:36,079 INFO : 22% Done

27 Sep 2022 15:27:36,153 INFO : 25% Done

27 Sep 2022 15:27:36,250 INFO : 27% Done

27 Sep 2022 15:27:36,330 INFO : 29% Done

27 Sep 2022 15:27:36,420 INFO : 32% Done

27 Sep 2022 15:27:36,514 INFO : 35% Done

27 Sep 2022 15:27:36,601 INFO : 37% Done

27 Sep 2022 15:27:36,668 INFO : 40% Done

27 Sep 2022 15:27:36,744 INFO : 43% Done

27 Sep 2022 15:27:36,834 INFO : 45% Done

27 Sep 2022 15:27:36,930 INFO : 47% Done

27 Sep 2022 15:27:37,024 INFO : 50% Done

27 Sep 2022 15:27:37,117 INFO : 53% Done

27 Sep 2022 15:27:37,191 INFO : 55% Done

27 Sep 2022 15:27:37,260 INFO : 58% Done

27 Sep 2022 15:27:37,346 INFO : 60% Done

27 Sep 2022 15:27:37,429 DEBUG: Total molecules inserted: 23

27 Sep 2022 15:27:37,432 INFO : Done parsing Skyline document.

27 Sep 2022 15:27:37,488 INFO : No group comparisons found.

27 Sep 2022 15:27:37,488 INFO : Calculating calibration curves

27 Sep 2022 15:27:37,488 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

27 Sep 2022 15:27:37,774 INFO : 68% Done

27 Sep 2022 15:27:37,778 INFO : Done calculating calibration curves.

27 Sep 2022 15:27:38,778 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 89

27 Sep 2022 15:27:39,793 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 89

27 Sep 2022 15:27:39,797 INFO : 69% Done

27 Sep 2022 15:27:40,861 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 89

27 Sep 2022 15:27:41,853 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 89

27 Sep 2022 15:27:42,852 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 89

27 Sep 2022 15:27:42,856 INFO : 70% Done

27 Sep 2022 15:27:43,874 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 89

27 Sep 2022 15:27:44,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 89

27 Sep 2022 15:27:45,851 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 89

27 Sep 2022 15:27:45,854 INFO : 71% Done

27 Sep 2022 15:27:46,840 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 89

27 Sep 2022 15:27:47,812 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 89

27 Sep 2022 15:27:48,790 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 89

27 Sep 2022 15:27:48,793 INFO : 72% Done

27 Sep 2022 15:27:49,776 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 89

27 Sep 2022 15:27:50,738 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 89

27 Sep 2022 15:27:50,741 INFO : 73% Done

27 Sep 2022 15:27:51,735 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 89

27 Sep 2022 15:27:52,690 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 89

27 Sep 2022 15:27:53,675 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 89

27 Sep 2022 15:27:54,628 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 89

27 Sep 2022 15:27:54,631 INFO : 74% Done

27 Sep 2022 15:27:55,590 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 89

27 Sep 2022 15:27:56,559 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 89

27 Sep 2022 15:27:57,525 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 89

27 Sep 2022 15:27:57,528 INFO : 75% Done

27 Sep 2022 15:27:58,459 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 89

27 Sep 2022 15:27:59,415 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 89

27 Sep 2022 15:27:59,418 INFO : 76% Done

27 Sep 2022 15:28:00,394 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 89

27 Sep 2022 15:28:01,337 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 89

27 Sep 2022 15:28:02,318 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 89

27 Sep 2022 15:28:03,245 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 89

27 Sep 2022 15:28:03,248 INFO : 77% Done

27 Sep 2022 15:28:04,180 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 89

27 Sep 2022 15:28:05,147 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 89

27 Sep 2022 15:28:06,096 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 89

27 Sep 2022 15:28:06,099 INFO : 78% Done

27 Sep 2022 15:28:07,050 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 89

27 Sep 2022 15:28:08,008 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 89

27 Sep 2022 15:28:08,010 INFO : 79% Done

27 Sep 2022 15:28:08,979 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 89

27 Sep 2022 15:28:09,922 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 89

27 Sep 2022 15:28:10,907 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 89

27 Sep 2022 15:28:11,872 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 89

27 Sep 2022 15:28:11,875 INFO : 80% Done

27 Sep 2022 15:28:12,815 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 89

27 Sep 2022 15:28:13,784 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 89

27 Sep 2022 15:28:13,787 INFO : 81% Done

27 Sep 2022 15:28:14,737 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1_20220919185308.raw in QC folder. 38 of 89

27 Sep 2022 15:28:15,704 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 39 of 89

27 Sep 2022 15:28:16,693 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 40 of 89

27 Sep 2022 15:28:16,695 INFO : 82% Done

27 Sep 2022 15:28:17,635 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 41 of 89

27 Sep 2022 15:28:18,589 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 42 of 89

27 Sep 2022 15:28:19,567 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 43 of 89

27 Sep 2022 15:28:20,531 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Blank1.raw in QC folder. 44 of 89

27 Sep 2022 15:28:20,534 INFO : 83% Done

27 Sep 2022 15:28:21,487 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 45 of 89

27 Sep 2022 15:28:22,490 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1.raw in QC folder. 46 of 89

27 Sep 2022 15:28:22,493 INFO : 84% Done

27 Sep 2022 15:28:23,462 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 47 of 89

27 Sep 2022 15:28:24,456 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 48 of 89

27 Sep 2022 15:28:25,413 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 49 of 89

27 Sep 2022 15:28:25,415 INFO : 85% Done

27 Sep 2022 15:28:26,354 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 50 of 89

27 Sep 2022 15:28:27,332 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 51 of 89

27 Sep 2022 15:28:28,297 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 52 of 89

27 Sep 2022 15:28:29,225 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 53 of 89

27 Sep 2022 15:28:29,228 INFO : 86% Done

27 Sep 2022 15:28:30,195 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 54 of 89

27 Sep 2022 15:28:31,169 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_27_22_Blank2.raw in QC folder. 55 of 89

27 Sep 2022 15:28:31,172 INFO : 87% Done

27 Sep 2022 15:28:32,105 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 56 of 89

27 Sep 2022 15:28:33,043 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 57 of 89

27 Sep 2022 15:28:34,023 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 58 of 89

27 Sep 2022 15:28:34,026 INFO : 88% Done

27 Sep 2022 15:28:34,966 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 59 of 89

27 Sep 2022 15:28:35,949 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank2.raw in QC folder. 60 of 89

27 Sep 2022 15:28:36,919 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 61 of 89

27 Sep 2022 15:28:36,922 INFO : 89% Done

27 Sep 2022 15:28:37,869 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 62 of 89

27 Sep 2022 15:28:38,847 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 63 of 89

27 Sep 2022 15:28:39,836 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 64 of 89

27 Sep 2022 15:28:39,839 INFO : 90% Done

27 Sep 2022 15:28:40,807 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 65 of 89

27 Sep 2022 15:28:41,787 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 66 of 89

27 Sep 2022 15:28:42,786 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 67 of 89

27 Sep 2022 15:28:42,789 INFO : 91% Done

27 Sep 2022 15:28:43,782 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 68 of 89

27 Sep 2022 15:28:44,762 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 69 of 89

27 Sep 2022 15:28:45,765 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 70 of 89

27 Sep 2022 15:28:45,768 INFO : 92% Done

27 Sep 2022 15:28:46,761 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 71 of 89

27 Sep 2022 15:28:47,787 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 72 of 89

27 Sep 2022 15:28:48,764 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 73 of 89

27 Sep 2022 15:28:48,767 INFO : 93% Done

27 Sep 2022 15:28:49,730 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 74 of 89

27 Sep 2022 15:28:50,720 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 75 of 89

27 Sep 2022 15:28:51,708 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 76 of 89

27 Sep 2022 15:28:51,712 INFO : 94% Done

27 Sep 2022 15:28:52,704 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 77 of 89

27 Sep 2022 15:28:53,697 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 78 of 89

27 Sep 2022 15:28:54,694 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 79 of 89

27 Sep 2022 15:28:54,698 INFO : 95% Done

27 Sep 2022 15:28:55,658 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 80 of 89

27 Sep 2022 15:28:56,627 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 81 of 89

27 Sep 2022 15:28:57,615 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 82 of 89

27 Sep 2022 15:28:57,618 INFO : 96% Done

27 Sep 2022 15:28:58,579 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 83 of 89

27 Sep 2022 15:28:59,568 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 84 of 89

27 Sep 2022 15:29:00,535 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 85 of 89

27 Sep 2022 15:29:00,538 INFO : 97% Done

27 Sep 2022 15:29:01,496 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 86 of 89

27 Sep 2022 15:29:02,477 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 87 of 89

27 Sep 2022 15:29:03,450 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 88 of 89

27 Sep 2022 15:29:03,453 INFO : 98% Done

27 Sep 2022 15:29:04,414 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 89 of 89

27 Sep 2022 15:29:04,414 INFO : Done updating previously imported sample file data.

27 Sep 2022 15:29:04,940 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-02-26.sky.zip have been updated with newer data.

27 Sep 2022 15:29:04,940 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-02-26.sky.zip

27 Sep 2022 15:29:04,940 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-02-26

27 Sep 2022 15:29:04,940 INFO : Creating and populating temp tables for Proportion values

27 Sep 2022 15:29:05,009 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Sep 2022 15:29:05,171 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Sep 2022 15:29:05,232 INFO : Cleaning up temp tables

27 Sep 2022 15:29:05,440 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_18-27-19.sky.zip

27 Sep 2022 15:29:05,443 INFO : 100% Done

27 Sep 2022 15:29:05,470 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'