27 Sep 2022 14:37:45,047 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Sep 2022 14:37:45,050 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_17-37-30.sky.zip

27 Sep 2022 14:37:45,051 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

27 Sep 2022 14:37:46,133 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

27 Sep 2022 14:37:46,160 INFO : 2% Done

27 Sep 2022 14:37:46,428 DEBUG: Starting to load chromatogram headers

27 Sep 2022 14:37:46,442 DEBUG: Done loading chromatogram headers

27 Sep 2022 14:37:46,901 INFO : Inserting Precursors_Mix_1

27 Sep 2022 14:37:46,915 INFO : 4% Done

27 Sep 2022 14:37:47,018 INFO : 7% Done

27 Sep 2022 14:37:47,086 INFO : 10% Done

27 Sep 2022 14:37:47,154 INFO : 12% Done

27 Sep 2022 14:37:47,223 INFO : 14% Done

27 Sep 2022 14:37:47,295 INFO : 17% Done

27 Sep 2022 14:37:47,364 INFO : 19% Done

27 Sep 2022 14:37:47,433 INFO : 22% Done

27 Sep 2022 14:37:47,503 INFO : 25% Done

27 Sep 2022 14:37:47,574 INFO : 27% Done

27 Sep 2022 14:37:47,645 INFO : 29% Done

27 Sep 2022 14:37:47,714 INFO : 32% Done

27 Sep 2022 14:37:47,796 INFO : 35% Done

27 Sep 2022 14:37:47,868 INFO : 37% Done

27 Sep 2022 14:37:47,941 INFO : 40% Done

27 Sep 2022 14:37:48,018 INFO : 43% Done

27 Sep 2022 14:37:48,099 INFO : 45% Done

27 Sep 2022 14:37:48,172 INFO : 47% Done

27 Sep 2022 14:37:48,243 INFO : 50% Done

27 Sep 2022 14:37:48,323 INFO : 53% Done

27 Sep 2022 14:37:48,400 INFO : 55% Done

27 Sep 2022 14:37:48,474 INFO : 58% Done

27 Sep 2022 14:37:48,544 INFO : 60% Done

27 Sep 2022 14:37:48,600 DEBUG: Total molecules inserted: 23

27 Sep 2022 14:37:48,601 INFO : Done parsing Skyline document.

27 Sep 2022 14:37:48,662 INFO : No group comparisons found.

27 Sep 2022 14:37:48,662 INFO : Calculating calibration curves

27 Sep 2022 14:37:48,662 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

27 Sep 2022 14:37:48,981 INFO : 68% Done

27 Sep 2022 14:37:48,985 INFO : Done calculating calibration curves.

27 Sep 2022 14:37:50,170 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 84

27 Sep 2022 14:37:51,166 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 84

27 Sep 2022 14:37:51,171 INFO : 69% Done

27 Sep 2022 14:37:52,160 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 84

27 Sep 2022 14:37:53,158 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 84

27 Sep 2022 14:37:53,161 INFO : 70% Done

27 Sep 2022 14:37:54,145 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 84

27 Sep 2022 14:37:55,147 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 84

27 Sep 2022 14:37:56,130 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 84

27 Sep 2022 14:37:57,146 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 84

27 Sep 2022 14:37:57,149 INFO : 71% Done

27 Sep 2022 14:37:58,145 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 84

27 Sep 2022 14:37:59,141 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 84

27 Sep 2022 14:37:59,144 INFO : 72% Done

27 Sep 2022 14:38:00,124 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 84

27 Sep 2022 14:38:01,111 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 84

27 Sep 2022 14:38:02,131 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 84

27 Sep 2022 14:38:02,134 INFO : 73% Done

27 Sep 2022 14:38:03,099 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 84

27 Sep 2022 14:38:04,073 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 84

27 Sep 2022 14:38:05,082 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 84

27 Sep 2022 14:38:05,084 INFO : 74% Done

27 Sep 2022 14:38:06,042 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 84

27 Sep 2022 14:38:06,997 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 84

27 Sep 2022 14:38:08,009 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 84

27 Sep 2022 14:38:08,013 INFO : 75% Done

27 Sep 2022 14:38:08,981 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 84

27 Sep 2022 14:38:09,988 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 84

27 Sep 2022 14:38:09,992 INFO : 76% Done

27 Sep 2022 14:38:10,967 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 84

27 Sep 2022 14:38:11,957 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 84

27 Sep 2022 14:38:12,955 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 84

27 Sep 2022 14:38:12,957 INFO : 77% Done

27 Sep 2022 14:38:13,915 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 84

27 Sep 2022 14:38:14,888 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 84

27 Sep 2022 14:38:15,886 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 84

27 Sep 2022 14:38:15,888 INFO : 78% Done

27 Sep 2022 14:38:16,848 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 84

27 Sep 2022 14:38:17,811 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 84

27 Sep 2022 14:38:17,815 INFO : 79% Done

27 Sep 2022 14:38:18,830 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 84

27 Sep 2022 14:38:19,766 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 84

27 Sep 2022 14:38:20,771 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 84

27 Sep 2022 14:38:21,730 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 84

27 Sep 2022 14:38:21,731 INFO : 80% Done

27 Sep 2022 14:38:22,664 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 84

27 Sep 2022 14:38:23,659 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 84

27 Sep 2022 14:38:23,661 INFO : 81% Done

27 Sep 2022 14:38:24,691 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 84

27 Sep 2022 14:38:25,673 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 84

27 Sep 2022 14:38:26,667 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 38 of 84

27 Sep 2022 14:38:26,670 INFO : 82% Done

27 Sep 2022 14:38:27,595 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 39 of 84

27 Sep 2022 14:38:28,540 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 40 of 84

27 Sep 2022 14:38:29,544 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 41 of 84

27 Sep 2022 14:38:29,545 INFO : 83% Done

27 Sep 2022 14:38:30,493 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 42 of 84

27 Sep 2022 14:38:31,432 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 43 of 84

27 Sep 2022 14:38:32,428 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 44 of 84

27 Sep 2022 14:38:32,431 INFO : 84% Done

27 Sep 2022 14:38:33,395 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 45 of 84

27 Sep 2022 14:38:34,385 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 46 of 84

27 Sep 2022 14:38:34,389 INFO : 85% Done

27 Sep 2022 14:38:35,369 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 47 of 84

27 Sep 2022 14:38:36,348 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 48 of 84

27 Sep 2022 14:38:37,327 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 49 of 84

27 Sep 2022 14:38:38,270 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 50 of 84

27 Sep 2022 14:38:38,273 INFO : 86% Done

27 Sep 2022 14:38:39,238 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 51 of 84

27 Sep 2022 14:38:40,245 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 52 of 84

27 Sep 2022 14:38:40,247 INFO : 87% Done

27 Sep 2022 14:38:41,181 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 53 of 84

27 Sep 2022 14:38:42,133 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 54 of 84

27 Sep 2022 14:38:43,129 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 55 of 84

27 Sep 2022 14:38:43,132 INFO : 88% Done

27 Sep 2022 14:38:44,080 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 56 of 84

27 Sep 2022 14:38:45,058 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 57 of 84

27 Sep 2022 14:38:46,025 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 58 of 84

27 Sep 2022 14:38:46,027 INFO : 89% Done

27 Sep 2022 14:38:46,986 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 59 of 84

27 Sep 2022 14:38:47,958 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 60 of 84

27 Sep 2022 14:38:48,955 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 61 of 84

27 Sep 2022 14:38:48,958 INFO : 90% Done

27 Sep 2022 14:38:49,907 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 62 of 84

27 Sep 2022 14:38:50,848 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 63 of 84

27 Sep 2022 14:38:50,850 INFO : 91% Done

27 Sep 2022 14:38:51,857 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 64 of 84

27 Sep 2022 14:38:52,792 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 65 of 84

27 Sep 2022 14:38:53,795 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 66 of 84

27 Sep 2022 14:38:53,798 INFO : 92% Done

27 Sep 2022 14:38:54,752 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 67 of 84

27 Sep 2022 14:38:55,746 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 68 of 84

27 Sep 2022 14:38:56,749 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 69 of 84

27 Sep 2022 14:38:56,750 INFO : 93% Done

27 Sep 2022 14:38:57,689 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 70 of 84

27 Sep 2022 14:38:58,654 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 71 of 84

27 Sep 2022 14:38:58,657 INFO : 94% Done

27 Sep 2022 14:38:59,635 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 72 of 84

27 Sep 2022 14:39:00,598 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 73 of 84

27 Sep 2022 14:39:01,593 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 74 of 84

27 Sep 2022 14:39:02,552 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 75 of 84

27 Sep 2022 14:39:02,554 INFO : 95% Done

27 Sep 2022 14:39:03,516 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 76 of 84

27 Sep 2022 14:39:04,504 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 77 of 84

27 Sep 2022 14:39:04,507 INFO : 96% Done

27 Sep 2022 14:39:05,460 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 78 of 84

27 Sep 2022 14:39:06,440 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 79 of 84

27 Sep 2022 14:39:07,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 80 of 84

27 Sep 2022 14:39:07,395 INFO : 97% Done

27 Sep 2022 14:39:08,327 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 81 of 84

27 Sep 2022 14:39:09,293 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 82 of 84

27 Sep 2022 14:39:10,288 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 83 of 84

27 Sep 2022 14:39:10,290 INFO : 98% Done

27 Sep 2022 14:39:11,252 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 84 of 84

27 Sep 2022 14:39:11,252 INFO : Done updating previously imported sample file data.

27 Sep 2022 14:39:11,793 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_20-33-39.sky.zip have been updated with newer data.

27 Sep 2022 14:39:11,793 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_20-33-39.sky.zip

27 Sep 2022 14:39:11,793 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_20-33-39

27 Sep 2022 14:39:11,793 INFO : Creating and populating temp tables for Proportion values

27 Sep 2022 14:39:11,855 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Sep 2022 14:39:12,007 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Sep 2022 14:39:12,064 INFO : Cleaning up temp tables

27 Sep 2022 14:39:12,298 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-27_17-37-30.sky.zip

27 Sep 2022 14:39:12,301 INFO : 100% Done

27 Sep 2022 14:39:12,329 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'