19 Sep 2022 16:53:36,168 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

19 Sep 2022 16:53:36,170 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-53-25.sky.zip

19 Sep 2022 16:53:36,171 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

19 Sep 2022 16:53:36,172 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

19 Sep 2022 16:53:37,084 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

19 Sep 2022 16:53:37,188 INFO : 2% Done

19 Sep 2022 16:53:37,510 DEBUG: Starting to load chromatogram headers

19 Sep 2022 16:53:37,520 DEBUG: Done loading chromatogram headers

19 Sep 2022 16:53:37,910 INFO : Inserting Precursors_Mix_1

19 Sep 2022 16:53:37,920 INFO : 4% Done

19 Sep 2022 16:53:38,001 INFO : 7% Done

19 Sep 2022 16:53:38,062 INFO : 10% Done

19 Sep 2022 16:53:38,120 INFO : 12% Done

19 Sep 2022 16:53:38,198 INFO : 14% Done

19 Sep 2022 16:53:38,270 INFO : 17% Done

19 Sep 2022 16:53:38,331 INFO : 20% Done

19 Sep 2022 16:53:38,391 INFO : 22% Done

19 Sep 2022 16:53:38,460 INFO : 25% Done

19 Sep 2022 16:53:38,533 INFO : 27% Done

19 Sep 2022 16:53:38,602 INFO : 30% Done

19 Sep 2022 16:53:38,665 INFO : 32% Done

19 Sep 2022 16:53:38,730 INFO : 35% Done

19 Sep 2022 16:53:38,792 INFO : 37% Done

19 Sep 2022 16:53:38,853 INFO : 40% Done

19 Sep 2022 16:53:38,917 INFO : 43% Done

19 Sep 2022 16:53:38,978 INFO : 45% Done

19 Sep 2022 16:53:39,040 INFO : 47% Done

19 Sep 2022 16:53:39,103 INFO : 50% Done

19 Sep 2022 16:53:39,165 INFO : 53% Done

19 Sep 2022 16:53:39,226 INFO : 55% Done

19 Sep 2022 16:53:39,285 INFO : 58% Done

19 Sep 2022 16:53:39,345 INFO : 60% Done

19 Sep 2022 16:53:39,396 DEBUG: Total molecules inserted: 23

19 Sep 2022 16:53:39,398 INFO : Done parsing Skyline document.

19 Sep 2022 16:53:39,454 INFO : No group comparisons found.

19 Sep 2022 16:53:39,454 INFO : Calculating calibration curves

19 Sep 2022 16:53:39,454 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

19 Sep 2022 16:53:39,696 INFO : 68% Done

19 Sep 2022 16:53:39,700 INFO : Done calculating calibration curves.

19 Sep 2022 16:53:40,646 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 84

19 Sep 2022 16:53:41,647 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 84

19 Sep 2022 16:53:41,650 INFO : 69% Done

19 Sep 2022 16:53:42,617 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 84

19 Sep 2022 16:53:43,603 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 84

19 Sep 2022 16:53:43,605 INFO : 70% Done

19 Sep 2022 16:53:44,595 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 84

19 Sep 2022 16:53:45,579 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 84

19 Sep 2022 16:53:46,550 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 84

19 Sep 2022 16:53:47,494 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 84

19 Sep 2022 16:53:47,495 INFO : 71% Done

19 Sep 2022 16:53:48,452 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 84

19 Sep 2022 16:53:49,436 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 84

19 Sep 2022 16:53:49,438 INFO : 72% Done

19 Sep 2022 16:53:50,419 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 84

19 Sep 2022 16:53:51,392 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 84

19 Sep 2022 16:53:52,374 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 84

19 Sep 2022 16:53:52,375 INFO : 73% Done

19 Sep 2022 16:53:53,326 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 84

19 Sep 2022 16:53:54,252 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 84

19 Sep 2022 16:53:55,221 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 84

19 Sep 2022 16:53:55,222 INFO : 74% Done

19 Sep 2022 16:53:56,178 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 84

19 Sep 2022 16:53:57,148 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 84

19 Sep 2022 16:53:58,139 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 84

19 Sep 2022 16:53:58,140 INFO : 75% Done

19 Sep 2022 16:53:59,139 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 84

19 Sep 2022 16:54:00,145 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 84

19 Sep 2022 16:54:00,147 INFO : 76% Done

19 Sep 2022 16:54:01,137 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 84

19 Sep 2022 16:54:02,130 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 84

19 Sep 2022 16:54:03,165 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 84

19 Sep 2022 16:54:03,167 INFO : 77% Done

19 Sep 2022 16:54:04,140 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 84

19 Sep 2022 16:54:05,115 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 84

19 Sep 2022 16:54:06,103 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 84

19 Sep 2022 16:54:06,105 INFO : 78% Done

19 Sep 2022 16:54:07,093 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 84

19 Sep 2022 16:54:08,108 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 84

19 Sep 2022 16:54:08,110 INFO : 79% Done

19 Sep 2022 16:54:09,100 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 84

19 Sep 2022 16:54:10,087 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 84

19 Sep 2022 16:54:11,079 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 84

19 Sep 2022 16:54:12,105 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 84

19 Sep 2022 16:54:12,107 INFO : 80% Done

19 Sep 2022 16:54:13,138 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 84

19 Sep 2022 16:54:14,142 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 84

19 Sep 2022 16:54:14,143 INFO : 81% Done

19 Sep 2022 16:54:15,122 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 84

19 Sep 2022 16:54:16,103 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 84

19 Sep 2022 16:54:17,105 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1_20220919185308.raw in QC folder. 38 of 84

19 Sep 2022 16:54:17,107 INFO : 82% Done

19 Sep 2022 16:54:18,066 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 39 of 84

19 Sep 2022 16:54:19,025 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 40 of 84

19 Sep 2022 16:54:20,046 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 41 of 84

19 Sep 2022 16:54:20,047 INFO : 83% Done

19 Sep 2022 16:54:21,033 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 42 of 84

19 Sep 2022 16:54:22,027 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 43 of 84

19 Sep 2022 16:54:23,015 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 44 of 84

19 Sep 2022 16:54:23,017 INFO : 84% Done

19 Sep 2022 16:54:23,967 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1.raw in QC folder. 45 of 84

19 Sep 2022 16:54:24,941 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 46 of 84

19 Sep 2022 16:54:24,943 INFO : 85% Done

19 Sep 2022 16:54:25,942 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 47 of 84

19 Sep 2022 16:54:26,945 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 48 of 84

19 Sep 2022 16:54:27,940 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 49 of 84

19 Sep 2022 16:54:28,905 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 50 of 84

19 Sep 2022 16:54:28,908 INFO : 86% Done

19 Sep 2022 16:54:29,912 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 51 of 84

19 Sep 2022 16:54:30,901 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 52 of 84

19 Sep 2022 16:54:30,903 INFO : 87% Done

19 Sep 2022 16:54:31,872 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 53 of 84

19 Sep 2022 16:54:32,850 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 54 of 84

19 Sep 2022 16:54:33,820 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 55 of 84

19 Sep 2022 16:54:33,822 INFO : 88% Done

19 Sep 2022 16:54:34,770 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 56 of 84

19 Sep 2022 16:54:35,735 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 57 of 84

19 Sep 2022 16:54:36,705 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 58 of 84

19 Sep 2022 16:54:36,706 INFO : 89% Done

19 Sep 2022 16:54:37,655 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 59 of 84

19 Sep 2022 16:54:38,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 60 of 84

19 Sep 2022 16:54:39,648 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 61 of 84

19 Sep 2022 16:54:39,649 INFO : 90% Done

19 Sep 2022 16:54:40,606 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 62 of 84

19 Sep 2022 16:54:41,552 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 63 of 84

19 Sep 2022 16:54:41,554 INFO : 91% Done

19 Sep 2022 16:54:42,533 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 64 of 84

19 Sep 2022 16:54:43,495 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 65 of 84

19 Sep 2022 16:54:44,463 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 66 of 84

19 Sep 2022 16:54:44,464 INFO : 92% Done

19 Sep 2022 16:54:45,422 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 67 of 84

19 Sep 2022 16:54:46,389 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 68 of 84

19 Sep 2022 16:54:47,359 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 69 of 84

19 Sep 2022 16:54:47,361 INFO : 93% Done

19 Sep 2022 16:54:48,327 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 70 of 84

19 Sep 2022 16:54:49,302 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 71 of 84

19 Sep 2022 16:54:49,304 INFO : 94% Done

19 Sep 2022 16:54:50,314 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 72 of 84

19 Sep 2022 16:54:51,276 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 73 of 84

19 Sep 2022 16:54:52,287 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 74 of 84

19 Sep 2022 16:54:53,236 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 75 of 84

19 Sep 2022 16:54:53,238 INFO : 95% Done

19 Sep 2022 16:54:54,189 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 76 of 84

19 Sep 2022 16:54:55,170 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 77 of 84

19 Sep 2022 16:54:55,172 INFO : 96% Done

19 Sep 2022 16:54:56,144 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 78 of 84

19 Sep 2022 16:54:57,108 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 79 of 84

19 Sep 2022 16:54:58,086 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 80 of 84

19 Sep 2022 16:54:58,088 INFO : 97% Done

19 Sep 2022 16:54:59,031 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 81 of 84

19 Sep 2022 16:54:59,988 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 82 of 84

19 Sep 2022 16:55:00,981 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 83 of 84

19 Sep 2022 16:55:00,982 INFO : 98% Done

19 Sep 2022 16:55:01,945 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 84 of 84

19 Sep 2022 16:55:01,945 INFO : Done updating previously imported sample file data.

19 Sep 2022 16:55:02,540 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-28-33.sky.zip have been updated with newer data.

19 Sep 2022 16:55:02,540 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-28-33.sky.zip

19 Sep 2022 16:55:02,540 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-28-33

19 Sep 2022 16:55:02,540 INFO : Creating and populating temp tables for Proportion values

19 Sep 2022 16:55:02,604 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Sep 2022 16:55:02,765 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Sep 2022 16:55:02,823 INFO : Cleaning up temp tables

19 Sep 2022 16:55:03,015 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-53-25.sky.zip

19 Sep 2022 16:55:03,017 INFO : 100% Done

19 Sep 2022 16:55:03,042 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'