19 Sep 2022 16:34:11,896 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

19 Sep 2022 16:34:11,898 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-28-33.sky.zip

19 Sep 2022 16:34:11,898 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

19 Sep 2022 16:34:11,900 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

19 Sep 2022 16:34:12,921 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

19 Sep 2022 16:34:13,006 INFO : 2% Done

19 Sep 2022 16:34:13,256 DEBUG: Starting to load chromatogram headers

19 Sep 2022 16:34:13,265 DEBUG: Done loading chromatogram headers

19 Sep 2022 16:34:13,642 INFO : Inserting Precursors_Mix_1

19 Sep 2022 16:34:13,650 INFO : 4% Done

19 Sep 2022 16:34:13,710 INFO : 7% Done

19 Sep 2022 16:34:13,771 INFO : 10% Done

19 Sep 2022 16:34:13,840 INFO : 12% Done

19 Sep 2022 16:34:13,911 INFO : 14% Done

19 Sep 2022 16:34:13,975 INFO : 17% Done

19 Sep 2022 16:34:14,037 INFO : 20% Done

19 Sep 2022 16:34:14,107 INFO : 22% Done

19 Sep 2022 16:34:14,173 INFO : 25% Done

19 Sep 2022 16:34:14,240 INFO : 27% Done

19 Sep 2022 16:34:14,308 INFO : 29% Done

19 Sep 2022 16:34:14,373 INFO : 32% Done

19 Sep 2022 16:34:14,439 INFO : 35% Done

19 Sep 2022 16:34:14,505 INFO : 37% Done

19 Sep 2022 16:34:14,567 INFO : 40% Done

19 Sep 2022 16:34:14,626 INFO : 43% Done

19 Sep 2022 16:34:14,726 INFO : 45% Done

19 Sep 2022 16:34:14,788 INFO : 47% Done

19 Sep 2022 16:34:14,850 INFO : 50% Done

19 Sep 2022 16:34:14,915 INFO : 53% Done

19 Sep 2022 16:34:14,977 INFO : 55% Done

19 Sep 2022 16:34:15,033 INFO : 58% Done

19 Sep 2022 16:34:15,092 INFO : 60% Done

19 Sep 2022 16:34:15,141 DEBUG: Total molecules inserted: 23

19 Sep 2022 16:34:15,143 INFO : Done parsing Skyline document.

19 Sep 2022 16:34:15,197 INFO : No group comparisons found.

19 Sep 2022 16:34:15,197 INFO : Calculating calibration curves

19 Sep 2022 16:34:15,198 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

19 Sep 2022 16:34:15,465 INFO : 68% Done

19 Sep 2022 16:34:15,469 INFO : Done calculating calibration curves.

19 Sep 2022 16:34:16,462 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 83

19 Sep 2022 16:34:17,458 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 83

19 Sep 2022 16:34:17,461 INFO : 69% Done

19 Sep 2022 16:34:18,450 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 83

19 Sep 2022 16:34:19,429 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 83

19 Sep 2022 16:34:19,431 INFO : 70% Done

19 Sep 2022 16:34:20,406 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 83

19 Sep 2022 16:34:21,412 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 6 of 83

19 Sep 2022 16:34:22,377 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 83

19 Sep 2022 16:34:23,390 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 83

19 Sep 2022 16:34:23,392 INFO : 71% Done

19 Sep 2022 16:34:24,398 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 9 of 83

19 Sep 2022 16:34:25,382 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 10 of 83

19 Sep 2022 16:34:25,415 INFO : 72% Done

19 Sep 2022 16:34:26,428 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 11 of 83

19 Sep 2022 16:34:27,435 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 12 of 83

19 Sep 2022 16:34:28,420 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 83

19 Sep 2022 16:34:28,421 INFO : 73% Done

19 Sep 2022 16:34:29,395 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 83

19 Sep 2022 16:34:30,368 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 83

19 Sep 2022 16:34:31,359 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 83

19 Sep 2022 16:34:31,360 INFO : 74% Done

19 Sep 2022 16:34:32,353 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 17 of 83

19 Sep 2022 16:34:33,320 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 18 of 83

19 Sep 2022 16:34:33,322 INFO : 75% Done

19 Sep 2022 16:34:34,314 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 83

19 Sep 2022 16:34:35,297 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 20 of 83

19 Sep 2022 16:34:36,286 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 21 of 83

19 Sep 2022 16:34:36,288 INFO : 76% Done

19 Sep 2022 16:34:37,267 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 22 of 83

19 Sep 2022 16:34:38,291 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 23 of 83

19 Sep 2022 16:34:39,362 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 24 of 83

19 Sep 2022 16:34:39,363 INFO : 77% Done

19 Sep 2022 16:34:40,331 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 25 of 83

19 Sep 2022 16:34:41,302 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 26 of 83

19 Sep 2022 16:34:42,300 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 27 of 83

19 Sep 2022 16:34:42,301 INFO : 78% Done

19 Sep 2022 16:34:43,269 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 28 of 83

19 Sep 2022 16:34:44,246 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 29 of 83

19 Sep 2022 16:34:44,248 INFO : 79% Done

19 Sep 2022 16:34:45,241 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 83

19 Sep 2022 16:34:46,208 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 31 of 83

19 Sep 2022 16:34:47,189 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 83

19 Sep 2022 16:34:47,191 INFO : 80% Done

19 Sep 2022 16:34:48,161 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 33 of 83

19 Sep 2022 16:34:49,140 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 34 of 83

19 Sep 2022 16:34:50,131 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 35 of 83

19 Sep 2022 16:34:50,133 INFO : 81% Done

19 Sep 2022 16:34:51,119 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 36 of 83

19 Sep 2022 16:34:52,073 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 37 of 83

19 Sep 2022 16:34:52,075 INFO : 82% Done

19 Sep 2022 16:34:53,054 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 38 of 83

19 Sep 2022 16:34:53,994 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 39 of 83

19 Sep 2022 16:34:54,972 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 40 of 83

19 Sep 2022 16:34:55,907 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 41 of 83

19 Sep 2022 16:34:55,908 INFO : 83% Done

19 Sep 2022 16:34:56,842 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 42 of 83

19 Sep 2022 16:34:57,816 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 43 of 83

19 Sep 2022 16:34:57,818 INFO : 84% Done

19 Sep 2022 16:34:58,780 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\09_19_22_Blank1.raw in QC folder. 44 of 83

19 Sep 2022 16:34:59,739 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 45 of 83

19 Sep 2022 16:35:00,708 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 46 of 83

19 Sep 2022 16:35:00,709 INFO : 85% Done

19 Sep 2022 16:35:01,635 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 47 of 83

19 Sep 2022 16:35:02,637 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 48 of 83

19 Sep 2022 16:35:03,686 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 49 of 83

19 Sep 2022 16:35:03,688 INFO : 86% Done

19 Sep 2022 16:35:04,615 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 50 of 83

19 Sep 2022 16:35:05,529 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 51 of 83

19 Sep 2022 16:35:06,499 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 52 of 83

19 Sep 2022 16:35:06,501 INFO : 87% Done

19 Sep 2022 16:35:07,461 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 53 of 83

19 Sep 2022 16:35:08,429 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 54 of 83

19 Sep 2022 16:35:08,430 INFO : 88% Done

19 Sep 2022 16:35:09,394 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 55 of 83

19 Sep 2022 16:35:10,345 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 56 of 83

19 Sep 2022 16:35:11,323 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 57 of 83

19 Sep 2022 16:35:11,325 INFO : 89% Done

19 Sep 2022 16:35:12,269 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 58 of 83

19 Sep 2022 16:35:13,224 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 59 of 83

19 Sep 2022 16:35:14,247 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 60 of 83

19 Sep 2022 16:35:14,249 INFO : 90% Done

19 Sep 2022 16:35:15,239 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 61 of 83

19 Sep 2022 16:35:16,214 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 62 of 83

19 Sep 2022 16:35:16,216 INFO : 91% Done

19 Sep 2022 16:35:17,183 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 63 of 83

19 Sep 2022 16:35:18,142 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 64 of 83

19 Sep 2022 16:35:19,117 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 65 of 83

19 Sep 2022 16:35:20,071 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 66 of 83

19 Sep 2022 16:35:20,073 INFO : 92% Done

19 Sep 2022 16:35:21,034 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 67 of 83

19 Sep 2022 16:35:22,016 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 68 of 83

19 Sep 2022 16:35:22,018 INFO : 93% Done

19 Sep 2022 16:35:22,959 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 69 of 83

19 Sep 2022 16:35:23,893 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 70 of 83

19 Sep 2022 16:35:24,888 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 71 of 83

19 Sep 2022 16:35:24,891 INFO : 94% Done

19 Sep 2022 16:35:25,853 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 72 of 83

19 Sep 2022 16:35:26,935 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 73 of 83

19 Sep 2022 16:35:27,940 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 74 of 83

19 Sep 2022 16:35:27,941 INFO : 95% Done

19 Sep 2022 16:35:28,917 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 75 of 83

19 Sep 2022 16:35:29,897 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 76 of 83

19 Sep 2022 16:35:29,900 INFO : 96% Done

19 Sep 2022 16:35:30,948 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 77 of 83

19 Sep 2022 16:35:31,902 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 78 of 83

19 Sep 2022 16:35:32,959 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 79 of 83

19 Sep 2022 16:35:32,961 INFO : 97% Done

19 Sep 2022 16:35:33,919 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 80 of 83

19 Sep 2022 16:35:34,895 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 81 of 83

19 Sep 2022 16:35:35,939 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 82 of 83

19 Sep 2022 16:35:35,940 INFO : 98% Done

19 Sep 2022 16:35:36,907 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 83 of 83

19 Sep 2022 16:35:36,907 INFO : Done updating previously imported sample file data.

19 Sep 2022 16:35:37,540 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_18-28-49.sky.zip have been updated with newer data.

19 Sep 2022 16:35:37,540 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_18-28-49.sky.zip

19 Sep 2022 16:35:37,540 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-09-19_18-28-49

19 Sep 2022 16:35:37,540 INFO : Creating and populating temp tables for Proportion values

19 Sep 2022 16:35:37,611 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

19 Sep 2022 16:35:37,769 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

19 Sep 2022 16:35:37,829 INFO : Cleaning up temp tables

19 Sep 2022 16:35:38,034 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-09-19_19-28-33.sky.zip

19 Sep 2022 16:35:38,037 INFO : 100% Done

19 Sep 2022 16:35:38,069 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'