28 Jul 2022 13:02:08,664 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

28 Jul 2022 13:02:08,666 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-01-56.sky.zip

28 Jul 2022 13:02:08,666 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

28 Jul 2022 13:02:08,669 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

28 Jul 2022 13:02:09,579 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

28 Jul 2022 13:02:09,630 WARN : The version of this Skyline document is 22.12. This is newer than the highest supported version 20.22

28 Jul 2022 13:02:09,638 INFO : 2% Done

28 Jul 2022 13:02:09,875 DEBUG: Starting to load chromatogram headers

28 Jul 2022 13:02:09,884 DEBUG: Done loading chromatogram headers

28 Jul 2022 13:02:10,099 INFO : Inserting Precursors_Mix_1

28 Jul 2022 13:02:10,107 INFO : 4% Done

28 Jul 2022 13:02:10,167 INFO : 7% Done

28 Jul 2022 13:02:10,229 INFO : 10% Done

28 Jul 2022 13:02:10,285 INFO : 12% Done

28 Jul 2022 13:02:10,342 INFO : 14% Done

28 Jul 2022 13:02:10,401 INFO : 17% Done

28 Jul 2022 13:02:10,461 INFO : 19% Done

28 Jul 2022 13:02:10,522 INFO : 22% Done

28 Jul 2022 13:02:10,577 INFO : 25% Done

28 Jul 2022 13:02:10,635 INFO : 27% Done

28 Jul 2022 13:02:10,694 INFO : 29% Done

28 Jul 2022 13:02:10,782 INFO : 32% Done

28 Jul 2022 13:02:10,843 INFO : 35% Done

28 Jul 2022 13:02:10,896 INFO : 37% Done

28 Jul 2022 13:02:10,953 INFO : 40% Done

28 Jul 2022 13:02:11,021 INFO : 43% Done

28 Jul 2022 13:02:11,089 INFO : 45% Done

28 Jul 2022 13:02:11,151 INFO : 47% Done

28 Jul 2022 13:02:11,220 INFO : 50% Done

28 Jul 2022 13:02:11,279 INFO : 53% Done

28 Jul 2022 13:02:11,340 INFO : 55% Done

28 Jul 2022 13:02:11,402 INFO : 58% Done

28 Jul 2022 13:02:11,464 INFO : 60% Done

28 Jul 2022 13:02:11,517 DEBUG: Total molecules inserted: 23

28 Jul 2022 13:02:11,519 INFO : Done parsing Skyline document.

28 Jul 2022 13:02:11,577 INFO : No group comparisons found.

28 Jul 2022 13:02:11,577 INFO : Calculating calibration curves

28 Jul 2022 13:02:11,578 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

28 Jul 2022 13:02:11,878 INFO : 68% Done

28 Jul 2022 13:02:11,882 INFO : Done calculating calibration curves.

28 Jul 2022 13:02:12,852 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 78

28 Jul 2022 13:02:13,858 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 78

28 Jul 2022 13:02:13,862 INFO : 69% Done

28 Jul 2022 13:02:14,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 78

28 Jul 2022 13:02:15,854 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 78

28 Jul 2022 13:02:15,877 INFO : 70% Done

28 Jul 2022 13:02:16,879 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 78

28 Jul 2022 13:02:17,879 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 6 of 78

28 Jul 2022 13:02:18,889 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 7 of 78

28 Jul 2022 13:02:18,891 INFO : 71% Done

28 Jul 2022 13:02:19,881 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 8 of 78

28 Jul 2022 13:02:20,877 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 9 of 78

28 Jul 2022 13:02:20,880 INFO : 72% Done

28 Jul 2022 13:02:21,894 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 10 of 78

28 Jul 2022 13:02:22,873 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 11 of 78

28 Jul 2022 13:02:23,880 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 12 of 78

28 Jul 2022 13:02:23,882 INFO : 73% Done

28 Jul 2022 13:02:24,864 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 13 of 78

28 Jul 2022 13:02:25,820 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 14 of 78

28 Jul 2022 13:02:26,831 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 15 of 78

28 Jul 2022 13:02:26,833 INFO : 74% Done

28 Jul 2022 13:02:27,789 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 16 of 78

28 Jul 2022 13:02:28,760 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 17 of 78

28 Jul 2022 13:02:28,762 INFO : 75% Done

28 Jul 2022 13:02:29,744 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 18 of 78

28 Jul 2022 13:02:30,735 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 19 of 78

28 Jul 2022 13:02:31,709 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 20 of 78

28 Jul 2022 13:02:31,711 INFO : 76% Done

28 Jul 2022 13:02:32,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 21 of 78

28 Jul 2022 13:02:33,651 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 22 of 78

28 Jul 2022 13:02:34,677 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 23 of 78

28 Jul 2022 13:02:34,678 INFO : 77% Done

28 Jul 2022 13:02:35,615 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 24 of 78

28 Jul 2022 13:02:36,554 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 25 of 78

28 Jul 2022 13:02:36,556 INFO : 78% Done

28 Jul 2022 13:02:37,544 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 26 of 78

28 Jul 2022 13:02:38,492 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 27 of 78

28 Jul 2022 13:02:38,494 INFO : 79% Done

28 Jul 2022 13:02:39,481 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 28 of 78

28 Jul 2022 13:02:40,451 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 29 of 78

28 Jul 2022 13:02:41,420 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 30 of 78

28 Jul 2022 13:02:42,393 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 31 of 78

28 Jul 2022 13:02:42,395 INFO : 80% Done

28 Jul 2022 13:02:43,332 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 32 of 78

28 Jul 2022 13:02:44,301 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 33 of 78

28 Jul 2022 13:02:44,303 INFO : 81% Done

28 Jul 2022 13:02:45,290 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 34 of 78

28 Jul 2022 13:02:46,222 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 35 of 78

28 Jul 2022 13:02:46,223 INFO : 82% Done

28 Jul 2022 13:02:47,219 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 36 of 78

28 Jul 2022 13:02:48,157 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 37 of 78

28 Jul 2022 13:02:49,143 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 38 of 78

28 Jul 2022 13:02:49,145 INFO : 83% Done

28 Jul 2022 13:02:50,101 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 39 of 78

28 Jul 2022 13:02:51,079 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 40 of 78

28 Jul 2022 13:02:52,043 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 41 of 78

28 Jul 2022 13:02:52,045 INFO : 84% Done

28 Jul 2022 13:02:53,003 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 42 of 78

28 Jul 2022 13:02:53,976 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 43 of 78

28 Jul 2022 13:02:53,978 INFO : 85% Done

28 Jul 2022 13:02:55,007 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 44 of 78

28 Jul 2022 13:02:55,955 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 45 of 78

28 Jul 2022 13:02:56,965 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 46 of 78

28 Jul 2022 13:02:56,967 INFO : 86% Done

28 Jul 2022 13:02:57,938 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 47 of 78

28 Jul 2022 13:02:58,882 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 48 of 78

28 Jul 2022 13:02:58,885 INFO : 87% Done

28 Jul 2022 13:02:59,871 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 49 of 78

28 Jul 2022 13:03:00,854 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 50 of 78

28 Jul 2022 13:03:01,857 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 51 of 78

28 Jul 2022 13:03:01,859 INFO : 88% Done

28 Jul 2022 13:03:02,816 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 52 of 78

28 Jul 2022 13:03:03,783 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 53 of 78

28 Jul 2022 13:03:04,786 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 54 of 78

28 Jul 2022 13:03:04,789 INFO : 89% Done

28 Jul 2022 13:03:05,747 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 55 of 78

28 Jul 2022 13:03:06,717 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 56 of 78

28 Jul 2022 13:03:06,719 INFO : 90% Done

28 Jul 2022 13:03:07,706 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 57 of 78

28 Jul 2022 13:03:08,643 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 58 of 78

28 Jul 2022 13:03:09,636 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 59 of 78

28 Jul 2022 13:03:09,638 INFO : 91% Done

28 Jul 2022 13:03:10,587 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 60 of 78

28 Jul 2022 13:03:11,574 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 61 of 78

28 Jul 2022 13:03:12,526 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 62 of 78

28 Jul 2022 13:03:12,528 INFO : 92% Done

28 Jul 2022 13:03:13,468 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 63 of 78

28 Jul 2022 13:03:14,430 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 64 of 78

28 Jul 2022 13:03:14,432 INFO : 93% Done

28 Jul 2022 13:03:15,401 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 65 of 78

28 Jul 2022 13:03:16,361 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 66 of 78

28 Jul 2022 13:03:16,363 INFO : 94% Done

28 Jul 2022 13:03:17,343 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 67 of 78

28 Jul 2022 13:03:18,293 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 68 of 78

28 Jul 2022 13:03:19,290 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 69 of 78

28 Jul 2022 13:03:20,224 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 70 of 78

28 Jul 2022 13:03:20,226 INFO : 95% Done

28 Jul 2022 13:03:21,164 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 71 of 78

28 Jul 2022 13:03:22,171 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 72 of 78

28 Jul 2022 13:03:22,173 INFO : 96% Done

28 Jul 2022 13:03:23,142 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 73 of 78

28 Jul 2022 13:03:24,159 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 74 of 78

28 Jul 2022 13:03:24,161 INFO : 97% Done

28 Jul 2022 13:03:25,143 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 75 of 78

28 Jul 2022 13:03:26,134 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 76 of 78

28 Jul 2022 13:03:27,127 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 77 of 78

28 Jul 2022 13:03:27,129 INFO : 98% Done

28 Jul 2022 13:03:28,107 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 78 of 78

28 Jul 2022 13:03:28,107 INFO : Done updating previously imported sample file data.

28 Jul 2022 13:03:28,637 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_15-37-04.sky.zip have been updated with newer data.

28 Jul 2022 13:03:28,637 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_15-37-04.sky.zip

28 Jul 2022 13:03:28,637 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_15-37-04

28 Jul 2022 13:03:28,637 INFO : Creating and populating temp tables for Proportion values

28 Jul 2022 13:03:28,690 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

28 Jul 2022 13:03:28,827 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

28 Jul 2022 13:03:28,879 INFO : Cleaning up temp tables

28 Jul 2022 13:03:29,091 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_16-01-56.sky.zip

28 Jul 2022 13:03:29,094 INFO : 100% Done

28 Jul 2022 13:03:29,117 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'