28 Jul 2022 10:34:14,560 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
28 Jul 2022 10:34:14,562 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-32-34.sky.zip
28 Jul 2022 10:34:14,562 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib
28 Jul 2022 10:34:14,564 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd
28 Jul 2022 10:34:15,494 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky
28 Jul 2022 10:34:15,506 WARN : The version of this Skyline document is 22.12. This is newer than the highest supported version 20.22
28 Jul 2022 10:34:15,512 INFO : 2% Done
28 Jul 2022 10:34:15,767 DEBUG: Starting to load chromatogram headers
28 Jul 2022 10:34:15,777 DEBUG: Done loading chromatogram headers
28 Jul 2022 10:34:16,117 INFO : Inserting Precursors_Mix_1
28 Jul 2022 10:34:16,126 INFO : 4% Done
28 Jul 2022 10:34:16,183 INFO : 7% Done
28 Jul 2022 10:34:16,236 INFO : 10% Done
28 Jul 2022 10:34:16,287 INFO : 12% Done
28 Jul 2022 10:34:16,340 INFO : 14% Done
28 Jul 2022 10:34:16,391 INFO : 17% Done
28 Jul 2022 10:34:16,441 INFO : 20% Done
28 Jul 2022 10:34:16,492 INFO : 22% Done
28 Jul 2022 10:34:16,545 INFO : 25% Done
28 Jul 2022 10:34:16,601 INFO : 27% Done
28 Jul 2022 10:34:16,659 INFO : 30% Done
28 Jul 2022 10:34:16,712 INFO : 32% Done
28 Jul 2022 10:34:16,768 INFO : 35% Done
28 Jul 2022 10:34:16,823 INFO : 37% Done
28 Jul 2022 10:34:16,876 INFO : 40% Done
28 Jul 2022 10:34:16,933 INFO : 43% Done
28 Jul 2022 10:34:16,992 INFO : 45% Done
28 Jul 2022 10:34:17,052 INFO : 47% Done
28 Jul 2022 10:34:17,108 INFO : 50% Done
28 Jul 2022 10:34:17,168 INFO : 53% Done
28 Jul 2022 10:34:17,226 INFO : 55% Done
28 Jul 2022 10:34:17,282 INFO : 58% Done
28 Jul 2022 10:34:17,341 INFO : 60% Done
28 Jul 2022 10:34:17,392 DEBUG: Total molecules inserted: 23
28 Jul 2022 10:34:17,394 INFO : Done parsing Skyline document.
28 Jul 2022 10:34:17,455 INFO : No group comparisons found.
28 Jul 2022 10:34:17,455 INFO : Calculating calibration curves
28 Jul 2022 10:34:17,456 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1
28 Jul 2022 10:34:17,748 INFO : 68% Done
28 Jul 2022 10:34:17,752 INFO : Done calculating calibration curves.
28 Jul 2022 10:34:18,740 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 72
28 Jul 2022 10:34:19,767 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 72
28 Jul 2022 10:34:19,771 INFO : 69% Done
28 Jul 2022 10:34:20,774 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank2.raw in QC folder. 3 of 72
28 Jul 2022 10:34:21,768 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 4 of 72
28 Jul 2022 10:34:21,770 INFO : 70% Done
28 Jul 2022 10:34:22,802 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 5 of 72
28 Jul 2022 10:34:23,807 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 6 of 72
28 Jul 2022 10:34:24,844 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 7 of 72
28 Jul 2022 10:34:24,846 INFO : 71% Done
28 Jul 2022 10:34:25,826 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank3.raw in QC folder. 8 of 72
28 Jul 2022 10:34:26,818 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 9 of 72
28 Jul 2022 10:34:26,820 INFO : 72% Done
28 Jul 2022 10:34:27,813 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 10 of 72
28 Jul 2022 10:34:28,806 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 11 of 72
28 Jul 2022 10:34:28,809 INFO : 73% Done
28 Jul 2022 10:34:29,805 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 12 of 72
28 Jul 2022 10:34:30,814 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 13 of 72
28 Jul 2022 10:34:31,798 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 14 of 72
28 Jul 2022 10:34:31,800 INFO : 74% Done
28 Jul 2022 10:34:32,798 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 15 of 72
28 Jul 2022 10:34:33,779 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 16 of 72
28 Jul 2022 10:34:33,781 INFO : 75% Done
28 Jul 2022 10:34:34,795 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 17 of 72
28 Jul 2022 10:34:35,781 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 18 of 72
28 Jul 2022 10:34:35,783 INFO : 76% Done
28 Jul 2022 10:34:36,794 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 19 of 72
28 Jul 2022 10:34:37,770 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 20 of 72
28 Jul 2022 10:34:38,795 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 21 of 72
28 Jul 2022 10:34:38,797 INFO : 77% Done
28 Jul 2022 10:34:39,758 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 22 of 72
28 Jul 2022 10:34:40,716 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 23 of 72
28 Jul 2022 10:34:40,719 INFO : 78% Done
28 Jul 2022 10:34:41,795 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 24 of 72
28 Jul 2022 10:34:42,757 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 25 of 72
28 Jul 2022 10:34:42,760 INFO : 79% Done
28 Jul 2022 10:34:43,783 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 26 of 72
28 Jul 2022 10:34:44,746 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 27 of 72
28 Jul 2022 10:34:45,754 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 28 of 72
28 Jul 2022 10:34:45,756 INFO : 80% Done
28 Jul 2022 10:34:46,719 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 29 of 72
28 Jul 2022 10:34:47,724 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 30 of 72
28 Jul 2022 10:34:47,727 INFO : 81% Done
28 Jul 2022 10:34:48,704 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 31 of 72
28 Jul 2022 10:34:49,703 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 32 of 72
28 Jul 2022 10:34:50,693 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 33 of 72
28 Jul 2022 10:34:50,695 INFO : 82% Done
28 Jul 2022 10:34:51,673 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 34 of 72
28 Jul 2022 10:34:52,634 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\07_28_22_Blank1.raw in QC folder. 35 of 72
28 Jul 2022 10:34:52,636 INFO : 83% Done
28 Jul 2022 10:34:53,670 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 36 of 72
28 Jul 2022 10:34:54,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 37 of 72
28 Jul 2022 10:34:55,640 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 38 of 72
28 Jul 2022 10:34:55,641 INFO : 84% Done
28 Jul 2022 10:34:56,644 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 39 of 72
28 Jul 2022 10:34:57,632 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 40 of 72
28 Jul 2022 10:34:57,634 INFO : 85% Done
28 Jul 2022 10:34:58,696 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 41 of 72
28 Jul 2022 10:34:59,736 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 42 of 72
28 Jul 2022 10:35:00,803 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 43 of 72
28 Jul 2022 10:35:00,805 INFO : 86% Done
28 Jul 2022 10:35:01,769 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 44 of 72
28 Jul 2022 10:35:02,785 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 45 of 72
28 Jul 2022 10:35:02,787 INFO : 87% Done
28 Jul 2022 10:35:03,826 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 46 of 72
28 Jul 2022 10:35:04,834 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 47 of 72
28 Jul 2022 10:35:04,836 INFO : 88% Done
28 Jul 2022 10:35:05,823 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 48 of 72
28 Jul 2022 10:35:06,814 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 49 of 72
28 Jul 2022 10:35:07,794 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 50 of 72
28 Jul 2022 10:35:07,797 INFO : 89% Done
28 Jul 2022 10:35:08,788 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 51 of 72
28 Jul 2022 10:35:09,761 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 52 of 72
28 Jul 2022 10:35:09,763 INFO : 90% Done
28 Jul 2022 10:35:10,752 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 53 of 72
28 Jul 2022 10:35:11,723 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 54 of 72
28 Jul 2022 10:35:11,725 INFO : 91% Done
28 Jul 2022 10:35:12,760 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 55 of 72
28 Jul 2022 10:35:13,738 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 56 of 72
28 Jul 2022 10:35:14,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 57 of 72
28 Jul 2022 10:35:14,747 INFO : 92% Done
28 Jul 2022 10:35:15,712 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 58 of 72
28 Jul 2022 10:35:16,649 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 59 of 72
28 Jul 2022 10:35:16,653 INFO : 93% Done
28 Jul 2022 10:35:17,687 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 60 of 72
28 Jul 2022 10:35:18,633 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 61 of 72
28 Jul 2022 10:35:18,634 INFO : 94% Done
28 Jul 2022 10:35:19,644 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 62 of 72
28 Jul 2022 10:35:20,635 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\06_01_22_AutoQC_800ngL.raw in QC folder. 63 of 72
28 Jul 2022 10:35:21,628 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 64 of 72
28 Jul 2022 10:35:21,631 INFO : 95% Done
28 Jul 2022 10:35:22,676 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 65 of 72
28 Jul 2022 10:35:23,679 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 66 of 72
28 Jul 2022 10:35:23,681 INFO : 96% Done
28 Jul 2022 10:35:24,785 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 67 of 72
28 Jul 2022 10:35:25,784 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 68 of 72
28 Jul 2022 10:35:26,804 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 69 of 72
28 Jul 2022 10:35:26,806 INFO : 97% Done
28 Jul 2022 10:35:27,777 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 70 of 72
28 Jul 2022 10:35:28,754 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 71 of 72
28 Jul 2022 10:35:28,757 INFO : 98% Done
28 Jul 2022 10:35:29,807 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 72 of 72
28 Jul 2022 10:35:29,807 INFO : Done updating previously imported sample file data.
28 Jul 2022 10:35:30,316 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-07-39.sky.zip have been updated with newer data.
28 Jul 2022 10:35:30,316 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-07-39.sky.zip
28 Jul 2022 10:35:30,316 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-07-39
28 Jul 2022 10:35:30,316 INFO : Creating and populating temp tables for Proportion values
28 Jul 2022 10:35:30,369 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Jul 2022 10:35:30,490 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Jul 2022 10:35:30,533 INFO : Cleaning up temp tables
28 Jul 2022 10:35:30,728 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-07-28_13-32-34.sky.zip
28 Jul 2022 10:35:30,730 INFO : 100% Done
28 Jul 2022 10:35:30,750 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'