01 Jun 2022 14:16:39,019 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

01 Jun 2022 14:16:39,021 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-06-01_17-16-29.sky.zip

01 Jun 2022 14:16:39,021 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

01 Jun 2022 14:16:39,024 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

01 Jun 2022 14:16:39,829 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

01 Jun 2022 14:16:39,840 WARN : The version of this Skyline document is 22.11. This is newer than the highest supported version 20.22

01 Jun 2022 14:16:39,848 INFO : 2% Done

01 Jun 2022 14:16:40,144 DEBUG: Starting to load chromatogram headers

01 Jun 2022 14:16:40,153 DEBUG: Done loading chromatogram headers

01 Jun 2022 14:16:40,449 INFO : Inserting Precursors_Mix_1

01 Jun 2022 14:16:40,457 INFO : 4% Done

01 Jun 2022 14:16:40,517 INFO : 7% Done

01 Jun 2022 14:16:40,569 INFO : 10% Done

01 Jun 2022 14:16:40,621 INFO : 12% Done

01 Jun 2022 14:16:40,672 INFO : 14% Done

01 Jun 2022 14:16:40,723 INFO : 17% Done

01 Jun 2022 14:16:40,774 INFO : 20% Done

01 Jun 2022 14:16:40,824 INFO : 22% Done

01 Jun 2022 14:16:40,875 INFO : 25% Done

01 Jun 2022 14:16:40,925 INFO : 27% Done

01 Jun 2022 14:16:40,976 INFO : 30% Done

01 Jun 2022 14:16:41,031 INFO : 32% Done

01 Jun 2022 14:16:41,082 INFO : 35% Done

01 Jun 2022 14:16:41,132 INFO : 37% Done

01 Jun 2022 14:16:41,181 INFO : 40% Done

01 Jun 2022 14:16:41,230 INFO : 43% Done

01 Jun 2022 14:16:41,283 INFO : 45% Done

01 Jun 2022 14:16:41,338 INFO : 47% Done

01 Jun 2022 14:16:41,389 INFO : 50% Done

01 Jun 2022 14:16:41,442 INFO : 53% Done

01 Jun 2022 14:16:41,495 INFO : 55% Done

01 Jun 2022 14:16:41,546 INFO : 58% Done

01 Jun 2022 14:16:41,598 INFO : 60% Done

01 Jun 2022 14:16:41,640 DEBUG: Total molecules inserted: 23

01 Jun 2022 14:16:41,641 INFO : Done parsing Skyline document.

01 Jun 2022 14:16:41,692 INFO : No group comparisons found.

01 Jun 2022 14:16:41,692 INFO : Calculating calibration curves

01 Jun 2022 14:16:41,693 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

01 Jun 2022 14:16:41,970 INFO : 68% Done

01 Jun 2022 14:16:41,974 INFO : Done calculating calibration curves.

01 Jun 2022 14:16:43,130 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 68

01 Jun 2022 14:16:44,114 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 68

01 Jun 2022 14:16:44,117 INFO : 69% Done

01 Jun 2022 14:16:45,071 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 68

01 Jun 2022 14:16:46,054 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 68

01 Jun 2022 14:16:46,057 INFO : 70% Done

01 Jun 2022 14:16:47,024 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 68

01 Jun 2022 14:16:48,000 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 68

01 Jun 2022 14:16:48,002 INFO : 71% Done

01 Jun 2022 14:16:48,974 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\05_26_22_AutoQC_800ngL.raw in QC folder. 7 of 68

01 Jun 2022 14:16:49,935 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 8 of 68

01 Jun 2022 14:16:49,937 INFO : 72% Done

01 Jun 2022 14:16:50,905 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 9 of 68

01 Jun 2022 14:16:51,865 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 10 of 68

01 Jun 2022 14:16:51,869 INFO : 73% Done

01 Jun 2022 14:16:52,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 11 of 68

01 Jun 2022 14:16:53,777 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 12 of 68

01 Jun 2022 14:16:54,756 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 13 of 68

01 Jun 2022 14:16:54,758 INFO : 74% Done

01 Jun 2022 14:16:55,727 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 14 of 68

01 Jun 2022 14:16:56,695 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 15 of 68

01 Jun 2022 14:16:56,697 INFO : 75% Done

01 Jun 2022 14:16:57,650 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 16 of 68

01 Jun 2022 14:16:58,620 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 17 of 68

01 Jun 2022 14:16:58,634 INFO : 76% Done

01 Jun 2022 14:16:59,601 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 18 of 68

01 Jun 2022 14:17:00,558 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 19 of 68

01 Jun 2022 14:17:01,524 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 20 of 68

01 Jun 2022 14:17:01,526 INFO : 77% Done

01 Jun 2022 14:17:02,452 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 21 of 68

01 Jun 2022 14:17:03,386 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 22 of 68

01 Jun 2022 14:17:03,388 INFO : 78% Done

01 Jun 2022 14:17:04,364 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 23 of 68

01 Jun 2022 14:17:05,300 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 24 of 68

01 Jun 2022 14:17:05,302 INFO : 79% Done

01 Jun 2022 14:17:06,285 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 25 of 68

01 Jun 2022 14:17:07,258 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 26 of 68

01 Jun 2022 14:17:08,238 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 27 of 68

01 Jun 2022 14:17:08,242 INFO : 80% Done

01 Jun 2022 14:17:09,198 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 28 of 68

01 Jun 2022 14:17:10,177 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 29 of 68

01 Jun 2022 14:17:10,198 INFO : 81% Done

01 Jun 2022 14:17:11,162 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 30 of 68

01 Jun 2022 14:17:12,113 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 31 of 68

01 Jun 2022 14:17:12,115 INFO : 82% Done

01 Jun 2022 14:17:13,092 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 32 of 68

01 Jun 2022 14:17:14,045 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 33 of 68

01 Jun 2022 14:17:14,047 INFO : 83% Done

01 Jun 2022 14:17:15,027 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 34 of 68

01 Jun 2022 14:17:15,983 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 35 of 68

01 Jun 2022 14:17:16,982 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 36 of 68

01 Jun 2022 14:17:16,990 INFO : 84% Done

01 Jun 2022 14:17:17,945 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 37 of 68

01 Jun 2022 14:17:18,930 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 38 of 68

01 Jun 2022 14:17:18,932 INFO : 85% Done

01 Jun 2022 14:17:19,884 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 39 of 68

01 Jun 2022 14:17:20,865 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 40 of 68

01 Jun 2022 14:17:20,867 INFO : 86% Done

01 Jun 2022 14:17:21,847 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 41 of 68

01 Jun 2022 14:17:22,817 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 42 of 68

01 Jun 2022 14:17:22,819 INFO : 87% Done

01 Jun 2022 14:17:23,807 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 43 of 68

01 Jun 2022 14:17:24,776 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 44 of 68

01 Jun 2022 14:17:24,778 INFO : 88% Done

01 Jun 2022 14:17:25,788 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 45 of 68

01 Jun 2022 14:17:26,758 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 46 of 68

01 Jun 2022 14:17:27,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 47 of 68

01 Jun 2022 14:17:27,751 INFO : 89% Done

01 Jun 2022 14:17:28,725 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 48 of 68

01 Jun 2022 14:17:29,694 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 49 of 68

01 Jun 2022 14:17:29,697 INFO : 90% Done

01 Jun 2022 14:17:30,688 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 50 of 68

01 Jun 2022 14:17:31,652 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 51 of 68

01 Jun 2022 14:17:31,655 INFO : 91% Done

01 Jun 2022 14:17:32,640 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 52 of 68

01 Jun 2022 14:17:33,610 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 53 of 68

01 Jun 2022 14:17:34,587 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 54 of 68

01 Jun 2022 14:17:34,589 INFO : 92% Done

01 Jun 2022 14:17:35,571 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 55 of 68

01 Jun 2022 14:17:36,537 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 56 of 68

01 Jun 2022 14:17:36,549 INFO : 93% Done

01 Jun 2022 14:17:37,547 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 57 of 68

01 Jun 2022 14:17:38,547 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 58 of 68

01 Jun 2022 14:17:38,549 INFO : 94% Done

01 Jun 2022 14:17:39,530 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 59 of 68

01 Jun 2022 14:17:40,530 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 60 of 68

01 Jun 2022 14:17:41,533 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 61 of 68

01 Jun 2022 14:17:41,543 INFO : 95% Done

01 Jun 2022 14:17:42,529 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 62 of 68

01 Jun 2022 14:17:43,492 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 63 of 68

01 Jun 2022 14:17:43,494 INFO : 96% Done

01 Jun 2022 14:17:44,549 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 64 of 68

01 Jun 2022 14:17:45,738 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 65 of 68

01 Jun 2022 14:17:45,740 INFO : 97% Done

01 Jun 2022 14:17:46,753 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 66 of 68

01 Jun 2022 14:17:47,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 67 of 68

01 Jun 2022 14:17:47,747 INFO : 98% Done

01 Jun 2022 14:17:48,770 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 68 of 68

01 Jun 2022 14:17:48,770 INFO : Done updating previously imported sample file data.

01 Jun 2022 14:17:49,308 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-05-26_17-10-02.sky.zip have been updated with newer data.

01 Jun 2022 14:17:49,308 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-05-26_17-10-02.sky.zip

01 Jun 2022 14:17:49,308 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-05-26_17-10-02

01 Jun 2022 14:17:49,309 INFO : Creating and populating temp tables for Proportion values

01 Jun 2022 14:17:49,355 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

01 Jun 2022 14:17:49,484 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

01 Jun 2022 14:17:49,528 INFO : Cleaning up temp tables

01 Jun 2022 14:17:49,776 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-06-01_17-16-29.sky.zip

01 Jun 2022 14:17:49,778 INFO : 100% Done

01 Jun 2022 14:17:49,825 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'