26 May 2022 14:10:12,491 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

26 May 2022 14:10:12,493 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-05-26_17-10-02.sky.zip

26 May 2022 14:10:12,494 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

26 May 2022 14:10:12,496 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

26 May 2022 14:10:13,156 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

26 May 2022 14:10:13,220 WARN : The version of this Skyline document is 22.11. This is newer than the highest supported version 20.22

26 May 2022 14:10:13,235 INFO : 2% Done

26 May 2022 14:10:13,458 DEBUG: Starting to load chromatogram headers

26 May 2022 14:10:13,467 DEBUG: Done loading chromatogram headers

26 May 2022 14:10:13,763 INFO : Inserting Precursors_Mix_1

26 May 2022 14:10:13,772 INFO : 4% Done

26 May 2022 14:10:13,839 INFO : 7% Done

26 May 2022 14:10:13,889 INFO : 10% Done

26 May 2022 14:10:13,938 INFO : 12% Done

26 May 2022 14:10:13,988 INFO : 14% Done

26 May 2022 14:10:14,037 INFO : 17% Done

26 May 2022 14:10:14,086 INFO : 20% Done

26 May 2022 14:10:14,137 INFO : 22% Done

26 May 2022 14:10:14,186 INFO : 25% Done

26 May 2022 14:10:14,233 INFO : 27% Done

26 May 2022 14:10:14,282 INFO : 30% Done

26 May 2022 14:10:14,328 INFO : 32% Done

26 May 2022 14:10:14,376 INFO : 35% Done

26 May 2022 14:10:14,429 INFO : 37% Done

26 May 2022 14:10:14,474 INFO : 40% Done

26 May 2022 14:10:14,527 INFO : 43% Done

26 May 2022 14:10:14,578 INFO : 45% Done

26 May 2022 14:10:14,643 INFO : 47% Done

26 May 2022 14:10:14,702 INFO : 50% Done

26 May 2022 14:10:14,760 INFO : 53% Done

26 May 2022 14:10:14,813 INFO : 55% Done

26 May 2022 14:10:14,870 INFO : 58% Done

26 May 2022 14:10:14,924 INFO : 60% Done

26 May 2022 14:10:14,966 DEBUG: Total molecules inserted: 23

26 May 2022 14:10:14,967 INFO : Done parsing Skyline document.

26 May 2022 14:10:15,022 INFO : No group comparisons found.

26 May 2022 14:10:15,022 INFO : Calculating calibration curves

26 May 2022 14:10:15,022 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

26 May 2022 14:10:15,281 INFO : 68% Done

26 May 2022 14:10:15,286 INFO : Done calculating calibration curves.

26 May 2022 14:10:16,319 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 67

26 May 2022 14:10:17,294 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 67

26 May 2022 14:10:17,297 INFO : 69% Done

26 May 2022 14:10:18,261 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 67

26 May 2022 14:10:19,208 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 67

26 May 2022 14:10:19,210 INFO : 70% Done

26 May 2022 14:10:20,183 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 67

26 May 2022 14:10:21,133 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 67

26 May 2022 14:10:21,134 INFO : 71% Done

26 May 2022 14:10:22,118 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 7 of 67

26 May 2022 14:10:23,073 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 8 of 67

26 May 2022 14:10:23,074 INFO : 72% Done

26 May 2022 14:10:24,050 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 9 of 67

26 May 2022 14:10:24,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 10 of 67

26 May 2022 14:10:25,001 INFO : 73% Done

26 May 2022 14:10:25,973 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 11 of 67

26 May 2022 14:10:26,929 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 12 of 67

26 May 2022 14:10:27,888 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 13 of 67

26 May 2022 14:10:27,892 INFO : 74% Done

26 May 2022 14:10:28,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 14 of 67

26 May 2022 14:10:29,803 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 15 of 67

26 May 2022 14:10:29,805 INFO : 75% Done

26 May 2022 14:10:30,780 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 16 of 67

26 May 2022 14:10:31,718 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 17 of 67

26 May 2022 14:10:31,723 INFO : 76% Done

26 May 2022 14:10:32,707 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 18 of 67

26 May 2022 14:10:33,635 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 19 of 67

26 May 2022 14:10:34,627 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 20 of 67

26 May 2022 14:10:34,629 INFO : 77% Done

26 May 2022 14:10:35,582 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 21 of 67

26 May 2022 14:10:36,569 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 22 of 67

26 May 2022 14:10:36,571 INFO : 78% Done

26 May 2022 14:10:37,536 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 23 of 67

26 May 2022 14:10:38,504 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 24 of 67

26 May 2022 14:10:38,506 INFO : 79% Done

26 May 2022 14:10:39,470 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-10.raw in QC folder. 25 of 67

26 May 2022 14:10:40,438 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 26 of 67

26 May 2022 14:10:40,440 INFO : 80% Done

26 May 2022 14:10:41,407 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 27 of 67

26 May 2022 14:10:42,359 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 28 of 67

26 May 2022 14:10:42,361 INFO : 81% Done

26 May 2022 14:10:43,345 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 29 of 67

26 May 2022 14:10:44,299 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 30 of 67

26 May 2022 14:10:44,301 INFO : 82% Done

26 May 2022 14:10:45,281 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 31 of 67

26 May 2022 14:10:46,220 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 32 of 67

26 May 2022 14:10:47,196 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 33 of 67

26 May 2022 14:10:47,198 INFO : 83% Done

26 May 2022 14:10:48,141 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 34 of 67

26 May 2022 14:10:49,113 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 35 of 67

26 May 2022 14:10:49,115 INFO : 84% Done

26 May 2022 14:10:50,073 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_AutoQC_800ngL.raw in QC folder. 36 of 67

26 May 2022 14:10:51,037 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 37 of 67

26 May 2022 14:10:51,039 INFO : 85% Done

26 May 2022 14:10:52,003 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 38 of 67

26 May 2022 14:10:52,958 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 39 of 67

26 May 2022 14:10:53,931 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 40 of 67

26 May 2022 14:10:53,933 INFO : 86% Done

26 May 2022 14:10:54,874 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 41 of 67

26 May 2022 14:10:55,823 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 42 of 67

26 May 2022 14:10:55,825 INFO : 87% Done

26 May 2022 14:10:56,810 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 43 of 67

26 May 2022 14:10:57,755 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 44 of 67

26 May 2022 14:10:57,757 INFO : 88% Done

26 May 2022 14:10:58,734 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 45 of 67

26 May 2022 14:10:59,681 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 46 of 67

26 May 2022 14:10:59,683 INFO : 89% Done

26 May 2022 14:11:00,650 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 47 of 67

26 May 2022 14:11:01,612 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\04_22_22_Orbitrap 240 800 CON PFAS.raw in QC folder. 48 of 67

26 May 2022 14:11:01,614 INFO : 90% Done

26 May 2022 14:11:02,580 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 49 of 67

26 May 2022 14:11:03,550 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 50 of 67

26 May 2022 14:11:03,551 INFO : 91% Done

26 May 2022 14:11:04,505 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 51 of 67

26 May 2022 14:11:05,474 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 52 of 67

26 May 2022 14:11:06,427 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 53 of 67

26 May 2022 14:11:06,429 INFO : 92% Done

26 May 2022 14:11:07,403 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 54 of 67

26 May 2022 14:11:08,336 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 55 of 67

26 May 2022 14:11:08,338 INFO : 93% Done

26 May 2022 14:11:09,318 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 56 of 67

26 May 2022 14:11:10,272 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 57 of 67

26 May 2022 14:11:10,273 INFO : 94% Done

26 May 2022 14:11:11,268 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 58 of 67

26 May 2022 14:11:12,230 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 59 of 67

26 May 2022 14:11:13,210 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 60 of 67

26 May 2022 14:11:13,212 INFO : 95% Done

26 May 2022 14:11:14,187 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 61 of 67

26 May 2022 14:11:15,168 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 62 of 67

26 May 2022 14:11:15,171 INFO : 96% Done

26 May 2022 14:11:16,145 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 63 of 67

26 May 2022 14:11:17,117 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 64 of 67

26 May 2022 14:11:17,119 INFO : 97% Done

26 May 2022 14:11:18,114 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 65 of 67

26 May 2022 14:11:19,091 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 66 of 67

26 May 2022 14:11:19,094 INFO : 98% Done

26 May 2022 14:11:20,087 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 67 of 67

26 May 2022 14:11:20,088 INFO : Done updating previously imported sample file data.

26 May 2022 14:11:20,701 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-04-22_14-29-20.sky.zip have been updated with newer data.

26 May 2022 14:11:20,701 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-04-22_14-29-20.sky.zip

26 May 2022 14:11:20,701 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-04-22_14-29-20

26 May 2022 14:11:20,701 INFO : Creating and populating temp tables for Proportion values

26 May 2022 14:11:20,746 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 May 2022 14:11:20,867 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 May 2022 14:11:20,911 INFO : Cleaning up temp tables

26 May 2022 14:11:21,145 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-05-26_17-10-02.sky.zip

26 May 2022 14:11:21,189 INFO : 100% Done

26 May 2022 14:11:21,254 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'