23 Mar 2022 20:42:26,124 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 20:42:26,131 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-42-09.sky.zip

23 Mar 2022 20:42:26,132 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 20:42:26,135 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 20:42:26,831 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 20:42:26,868 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 20:42:26,875 INFO : 2% Done

23 Mar 2022 20:42:27,089 DEBUG: Starting to load chromatogram headers

23 Mar 2022 20:42:27,096 DEBUG: Done loading chromatogram headers

23 Mar 2022 20:42:27,431 INFO : Inserting Precursors_Mix_1

23 Mar 2022 20:42:27,442 INFO : 4% Done

23 Mar 2022 20:42:27,497 INFO : 7% Done

23 Mar 2022 20:42:27,546 INFO : 10% Done

23 Mar 2022 20:42:27,595 INFO : 12% Done

23 Mar 2022 20:42:27,644 INFO : 14% Done

23 Mar 2022 20:42:27,694 INFO : 17% Done

23 Mar 2022 20:42:27,747 INFO : 20% Done

23 Mar 2022 20:42:27,799 INFO : 22% Done

23 Mar 2022 20:42:27,850 INFO : 25% Done

23 Mar 2022 20:42:27,902 INFO : 27% Done

23 Mar 2022 20:42:27,953 INFO : 29% Done

23 Mar 2022 20:42:28,002 INFO : 32% Done

23 Mar 2022 20:42:28,053 INFO : 35% Done

23 Mar 2022 20:42:28,101 INFO : 37% Done

23 Mar 2022 20:42:28,151 INFO : 40% Done

23 Mar 2022 20:42:28,199 INFO : 43% Done

23 Mar 2022 20:42:28,247 INFO : 45% Done

23 Mar 2022 20:42:28,298 INFO : 47% Done

23 Mar 2022 20:42:28,346 INFO : 50% Done

23 Mar 2022 20:42:28,396 INFO : 53% Done

23 Mar 2022 20:42:28,445 INFO : 55% Done

23 Mar 2022 20:42:28,493 INFO : 58% Done

23 Mar 2022 20:42:28,557 INFO : 60% Done

23 Mar 2022 20:42:28,602 DEBUG: Total molecules inserted: 23

23 Mar 2022 20:42:28,603 INFO : Done parsing Skyline document.

23 Mar 2022 20:42:28,608 INFO : No group comparisons found.

23 Mar 2022 20:42:28,608 INFO : Calculating calibration curves

23 Mar 2022 20:42:28,609 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 20:42:28,942 INFO : 68% Done

23 Mar 2022 20:42:28,947 INFO : Done calculating calibration curves.

23 Mar 2022 20:42:30,149 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 64

23 Mar 2022 20:42:30,151 INFO : 69% Done

23 Mar 2022 20:42:31,128 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 64

23 Mar 2022 20:42:32,116 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 64

23 Mar 2022 20:42:32,118 INFO : 70% Done

23 Mar 2022 20:42:33,091 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 64

23 Mar 2022 20:42:34,113 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 64

23 Mar 2022 20:42:35,096 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 64

23 Mar 2022 20:42:35,097 INFO : 71% Done

23 Mar 2022 20:42:36,078 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 7 of 64

23 Mar 2022 20:42:37,049 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 8 of 64

23 Mar 2022 20:42:37,051 INFO : 72% Done

23 Mar 2022 20:42:38,025 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 9 of 64

23 Mar 2022 20:42:39,042 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 10 of 64

23 Mar 2022 20:42:39,044 INFO : 73% Done

23 Mar 2022 20:42:40,011 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 11 of 64

23 Mar 2022 20:42:40,993 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-9.raw in QC folder. 12 of 64

23 Mar 2022 20:42:40,995 INFO : 74% Done

23 Mar 2022 20:42:41,968 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 13 of 64

23 Mar 2022 20:42:42,952 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 14 of 64

23 Mar 2022 20:42:42,954 INFO : 75% Done

23 Mar 2022 20:42:43,931 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 15 of 64

23 Mar 2022 20:42:44,913 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 16 of 64

23 Mar 2022 20:42:44,915 INFO : 76% Done

23 Mar 2022 20:42:45,889 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 17 of 64

23 Mar 2022 20:42:46,875 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 18 of 64

23 Mar 2022 20:42:47,872 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 19 of 64

23 Mar 2022 20:42:47,874 INFO : 77% Done

23 Mar 2022 20:42:48,842 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 20 of 64

23 Mar 2022 20:42:49,831 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 21 of 64

23 Mar 2022 20:42:49,833 INFO : 78% Done

23 Mar 2022 20:42:50,813 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 22 of 64

23 Mar 2022 20:42:51,787 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 23 of 64

23 Mar 2022 20:42:51,789 INFO : 79% Done

23 Mar 2022 20:42:52,774 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 24 of 64

23 Mar 2022 20:42:53,749 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 25 of 64

23 Mar 2022 20:42:53,751 INFO : 80% Done

23 Mar 2022 20:42:54,750 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 26 of 64

23 Mar 2022 20:42:55,720 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 27 of 64

23 Mar 2022 20:42:55,722 INFO : 81% Done

23 Mar 2022 20:42:56,707 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 28 of 64

23 Mar 2022 20:42:57,681 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 29 of 64

23 Mar 2022 20:42:57,683 INFO : 82% Done

23 Mar 2022 20:42:58,659 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 30 of 64

23 Mar 2022 20:42:59,673 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 31 of 64

23 Mar 2022 20:43:00,686 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 32 of 64

23 Mar 2022 20:43:00,688 INFO : 83% Done

23 Mar 2022 20:43:02,190 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 33 of 64

23 Mar 2022 20:43:02,192 INFO : 84% Done

23 Mar 2022 20:43:03,888 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 34 of 64

23 Mar 2022 20:43:05,574 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 35 of 64

23 Mar 2022 20:43:05,578 INFO : 85% Done

23 Mar 2022 20:43:07,249 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 36 of 64

23 Mar 2022 20:43:08,426 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 37 of 64

23 Mar 2022 20:43:09,710 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 38 of 64

23 Mar 2022 20:43:09,712 INFO : 86% Done

23 Mar 2022 20:43:10,813 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 39 of 64

23 Mar 2022 20:43:11,920 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 40 of 64

23 Mar 2022 20:43:11,922 INFO : 87% Done

23 Mar 2022 20:43:13,549 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 41 of 64

23 Mar 2022 20:43:14,942 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 42 of 64

23 Mar 2022 20:43:14,945 INFO : 88% Done

23 Mar 2022 20:43:16,159 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 43 of 64

23 Mar 2022 20:43:17,278 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 44 of 64

23 Mar 2022 20:43:17,280 INFO : 89% Done

23 Mar 2022 20:43:18,476 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 45 of 64

23 Mar 2022 20:43:19,555 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 46 of 64

23 Mar 2022 20:43:19,558 INFO : 90% Done

23 Mar 2022 20:43:20,700 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 47 of 64

23 Mar 2022 20:43:21,768 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 48 of 64

23 Mar 2022 20:43:21,771 INFO : 91% Done

23 Mar 2022 20:43:22,914 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 49 of 64

23 Mar 2022 20:43:24,339 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 50 of 64

23 Mar 2022 20:43:25,985 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 51 of 64

23 Mar 2022 20:43:25,988 INFO : 92% Done

23 Mar 2022 20:43:27,537 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 52 of 64

23 Mar 2022 20:43:29,204 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 53 of 64

23 Mar 2022 20:43:29,206 INFO : 93% Done

23 Mar 2022 20:43:30,560 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 54 of 64

23 Mar 2022 20:43:31,616 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 55 of 64

23 Mar 2022 20:43:31,617 INFO : 94% Done

23 Mar 2022 20:43:32,598 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 56 of 64

23 Mar 2022 20:43:33,586 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 57 of 64

23 Mar 2022 20:43:33,588 INFO : 95% Done

23 Mar 2022 20:43:34,577 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 58 of 64

23 Mar 2022 20:43:35,553 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 59 of 64

23 Mar 2022 20:43:35,555 INFO : 96% Done

23 Mar 2022 20:43:36,574 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 60 of 64

23 Mar 2022 20:43:37,548 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 61 of 64

23 Mar 2022 20:43:37,550 INFO : 97% Done

23 Mar 2022 20:43:38,531 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 62 of 64

23 Mar 2022 20:43:39,512 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 63 of 64

23 Mar 2022 20:43:40,501 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 64 of 64

23 Mar 2022 20:43:40,503 INFO : 98% Done

23 Mar 2022 20:43:40,503 INFO : Done updating previously imported sample file data.

23 Mar 2022 20:43:41,065 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-26-46.sky.zip have been updated with newer data.

23 Mar 2022 20:43:41,065 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-26-46.sky.zip

23 Mar 2022 20:43:41,065 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-26-46

23 Mar 2022 20:43:41,065 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 20:43:41,107 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 20:43:41,223 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 20:43:41,264 INFO : Cleaning up temp tables

23 Mar 2022 20:43:41,453 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-42-09.sky.zip

23 Mar 2022 20:43:41,456 INFO : 100% Done

23 Mar 2022 20:43:41,482 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'