23 Mar 2022 20:27:02,584 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 20:27:02,589 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-26-46.sky.zip

23 Mar 2022 20:27:02,590 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 20:27:02,592 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 20:27:03,345 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 20:27:03,405 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 20:27:03,413 INFO : 2% Done

23 Mar 2022 20:27:03,627 DEBUG: Starting to load chromatogram headers

23 Mar 2022 20:27:03,636 DEBUG: Done loading chromatogram headers

23 Mar 2022 20:27:03,950 INFO : Inserting Precursors_Mix_1

23 Mar 2022 20:27:03,961 INFO : 4% Done

23 Mar 2022 20:27:04,015 INFO : 7% Done

23 Mar 2022 20:27:04,066 INFO : 10% Done

23 Mar 2022 20:27:04,118 INFO : 12% Done

23 Mar 2022 20:27:04,168 INFO : 14% Done

23 Mar 2022 20:27:04,219 INFO : 17% Done

23 Mar 2022 20:27:04,272 INFO : 20% Done

23 Mar 2022 20:27:04,325 INFO : 22% Done

23 Mar 2022 20:27:04,379 INFO : 25% Done

23 Mar 2022 20:27:04,435 INFO : 27% Done

23 Mar 2022 20:27:04,491 INFO : 30% Done

23 Mar 2022 20:27:04,544 INFO : 32% Done

23 Mar 2022 20:27:04,597 INFO : 35% Done

23 Mar 2022 20:27:04,647 INFO : 37% Done

23 Mar 2022 20:27:04,696 INFO : 40% Done

23 Mar 2022 20:27:04,750 INFO : 43% Done

23 Mar 2022 20:27:04,798 INFO : 45% Done

23 Mar 2022 20:27:04,848 INFO : 47% Done

23 Mar 2022 20:27:04,895 INFO : 50% Done

23 Mar 2022 20:27:04,946 INFO : 53% Done

23 Mar 2022 20:27:04,997 INFO : 55% Done

23 Mar 2022 20:27:05,055 INFO : 58% Done

23 Mar 2022 20:27:05,112 INFO : 60% Done

23 Mar 2022 20:27:05,156 DEBUG: Total molecules inserted: 23

23 Mar 2022 20:27:05,157 INFO : Done parsing Skyline document.

23 Mar 2022 20:27:05,161 INFO : No group comparisons found.

23 Mar 2022 20:27:05,162 INFO : Calculating calibration curves

23 Mar 2022 20:27:05,162 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 20:27:05,549 INFO : 68% Done

23 Mar 2022 20:27:05,554 INFO : Done calculating calibration curves.

23 Mar 2022 20:27:06,749 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-7.raw in QC folder. 1 of 63

23 Mar 2022 20:27:06,751 INFO : 69% Done

23 Mar 2022 20:27:07,743 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 2 of 63

23 Mar 2022 20:27:08,740 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 3 of 63

23 Mar 2022 20:27:08,743 INFO : 70% Done

23 Mar 2022 20:27:09,718 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 63

23 Mar 2022 20:27:10,706 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 5 of 63

23 Mar 2022 20:27:11,699 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 6 of 63

23 Mar 2022 20:27:11,701 INFO : 71% Done

23 Mar 2022 20:27:12,722 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-6.raw in QC folder. 7 of 63

23 Mar 2022 20:27:13,735 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 8 of 63

23 Mar 2022 20:27:13,737 INFO : 72% Done

23 Mar 2022 20:27:14,742 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 9 of 63

23 Mar 2022 20:27:15,753 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 10 of 63

23 Mar 2022 20:27:15,755 INFO : 73% Done

23 Mar 2022 20:27:16,768 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 11 of 63

23 Mar 2022 20:27:17,779 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-5.raw in QC folder. 12 of 63

23 Mar 2022 20:27:17,781 INFO : 74% Done

23 Mar 2022 20:27:18,786 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 13 of 63

23 Mar 2022 20:27:19,821 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 14 of 63

23 Mar 2022 20:27:19,824 INFO : 75% Done

23 Mar 2022 20:27:20,833 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 15 of 63

23 Mar 2022 20:27:21,844 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 16 of 63

23 Mar 2022 20:27:21,846 INFO : 76% Done

23 Mar 2022 20:27:22,860 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 17 of 63

23 Mar 2022 20:27:23,887 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 18 of 63

23 Mar 2022 20:27:23,888 INFO : 77% Done

23 Mar 2022 20:27:24,917 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 19 of 63

23 Mar 2022 20:27:25,953 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 20 of 63

23 Mar 2022 20:27:25,956 INFO : 78% Done

23 Mar 2022 20:27:26,983 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 21 of 63

23 Mar 2022 20:27:27,987 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 22 of 63

23 Mar 2022 20:27:27,989 INFO : 79% Done

23 Mar 2022 20:27:29,020 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 23 of 63

23 Mar 2022 20:27:30,035 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 24 of 63

23 Mar 2022 20:27:31,070 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 25 of 63

23 Mar 2022 20:27:31,072 INFO : 80% Done

23 Mar 2022 20:27:32,094 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 26 of 63

23 Mar 2022 20:27:33,112 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-8.raw in QC folder. 27 of 63

23 Mar 2022 20:27:33,114 INFO : 81% Done

23 Mar 2022 20:27:34,136 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 28 of 63

23 Mar 2022 20:27:35,159 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 29 of 63

23 Mar 2022 20:27:35,161 INFO : 82% Done

23 Mar 2022 20:27:36,180 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 30 of 63

23 Mar 2022 20:27:37,197 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 31 of 63

23 Mar 2022 20:27:37,199 INFO : 83% Done

23 Mar 2022 20:27:38,223 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 32 of 63

23 Mar 2022 20:27:39,229 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 33 of 63

23 Mar 2022 20:27:39,231 INFO : 84% Done

23 Mar 2022 20:27:40,249 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 34 of 63

23 Mar 2022 20:27:41,254 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 35 of 63

23 Mar 2022 20:27:41,256 INFO : 85% Done

23 Mar 2022 20:27:42,280 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 36 of 63

23 Mar 2022 20:27:43,291 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 37 of 63

23 Mar 2022 20:27:43,293 INFO : 86% Done

23 Mar 2022 20:27:44,316 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 38 of 63

23 Mar 2022 20:27:45,330 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 39 of 63

23 Mar 2022 20:27:45,332 INFO : 87% Done

23 Mar 2022 20:27:46,344 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 40 of 63

23 Mar 2022 20:27:47,366 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 41 of 63

23 Mar 2022 20:27:47,368 INFO : 88% Done

23 Mar 2022 20:27:48,371 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 42 of 63

23 Mar 2022 20:27:49,403 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 43 of 63

23 Mar 2022 20:27:50,451 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 44 of 63

23 Mar 2022 20:27:50,453 INFO : 89% Done

23 Mar 2022 20:27:51,480 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 45 of 63

23 Mar 2022 20:27:52,492 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 46 of 63

23 Mar 2022 20:27:52,494 INFO : 90% Done

23 Mar 2022 20:27:53,537 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 47 of 63

23 Mar 2022 20:27:53,539 INFO : 91% Done

23 Mar 2022 20:27:54,553 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 48 of 63

23 Mar 2022 20:27:55,571 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 49 of 63

23 Mar 2022 20:27:56,590 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 50 of 63

23 Mar 2022 20:27:56,592 INFO : 92% Done

23 Mar 2022 20:27:57,633 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 51 of 63

23 Mar 2022 20:27:58,675 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 52 of 63

23 Mar 2022 20:27:58,677 INFO : 93% Done

23 Mar 2022 20:27:59,718 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 53 of 63

23 Mar 2022 20:28:00,731 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 54 of 63

23 Mar 2022 20:28:00,733 INFO : 94% Done

23 Mar 2022 20:28:01,772 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 55 of 63

23 Mar 2022 20:28:02,805 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 56 of 63

23 Mar 2022 20:28:02,806 INFO : 95% Done

23 Mar 2022 20:28:03,829 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 57 of 63

23 Mar 2022 20:28:04,859 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 58 of 63

23 Mar 2022 20:28:04,860 INFO : 96% Done

23 Mar 2022 20:28:05,889 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 59 of 63

23 Mar 2022 20:28:06,935 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 60 of 63

23 Mar 2022 20:28:06,937 INFO : 97% Done

23 Mar 2022 20:28:07,976 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 61 of 63

23 Mar 2022 20:28:09,049 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 62 of 63

23 Mar 2022 20:28:10,093 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 63 of 63

23 Mar 2022 20:28:10,096 INFO : 98% Done

23 Mar 2022 20:28:10,096 INFO : Done updating previously imported sample file data.

23 Mar 2022 20:28:10,705 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-01-51.sky.zip have been updated with newer data.

23 Mar 2022 20:28:10,705 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-01-51.sky.zip

23 Mar 2022 20:28:10,705 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-01-51

23 Mar 2022 20:28:10,705 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 20:28:10,752 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 20:28:10,868 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 20:28:10,913 INFO : Cleaning up temp tables

23 Mar 2022 20:28:11,097 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_23-26-46.sky.zip

23 Mar 2022 20:28:11,100 INFO : 100% Done

23 Mar 2022 20:28:11,133 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'