23 Mar 2022 18:47:18,006 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 18:47:18,009 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_21-47-03.sky.zip

23 Mar 2022 18:47:18,009 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 18:47:18,012 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 18:47:18,583 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 18:47:18,649 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 18:47:18,657 INFO : 2% Done

23 Mar 2022 18:47:18,855 DEBUG: Starting to load chromatogram headers

23 Mar 2022 18:47:18,863 DEBUG: Done loading chromatogram headers

23 Mar 2022 18:47:19,161 INFO : Inserting Precursors_Mix_1

23 Mar 2022 18:47:19,171 INFO : 4% Done

23 Mar 2022 18:47:19,239 INFO : 7% Done

23 Mar 2022 18:47:19,299 INFO : 10% Done

23 Mar 2022 18:47:19,348 INFO : 12% Done

23 Mar 2022 18:47:19,393 INFO : 14% Done

23 Mar 2022 18:47:19,451 INFO : 17% Done

23 Mar 2022 18:47:19,501 INFO : 20% Done

23 Mar 2022 18:47:19,548 INFO : 22% Done

23 Mar 2022 18:47:19,614 INFO : 25% Done

23 Mar 2022 18:47:19,678 INFO : 27% Done

23 Mar 2022 18:47:19,725 INFO : 30% Done

23 Mar 2022 18:47:19,769 INFO : 32% Done

23 Mar 2022 18:47:19,831 INFO : 35% Done

23 Mar 2022 18:47:19,898 INFO : 37% Done

23 Mar 2022 18:47:19,947 INFO : 40% Done

23 Mar 2022 18:47:19,992 INFO : 43% Done

23 Mar 2022 18:47:20,036 INFO : 45% Done

23 Mar 2022 18:47:20,081 INFO : 47% Done

23 Mar 2022 18:47:20,125 INFO : 50% Done

23 Mar 2022 18:47:20,169 INFO : 53% Done

23 Mar 2022 18:47:20,213 INFO : 55% Done

23 Mar 2022 18:47:20,257 INFO : 58% Done

23 Mar 2022 18:47:20,303 INFO : 60% Done

23 Mar 2022 18:47:20,340 DEBUG: Total molecules inserted: 23

23 Mar 2022 18:47:20,341 INFO : Done parsing Skyline document.

23 Mar 2022 18:47:20,345 INFO : No group comparisons found.

23 Mar 2022 18:47:20,345 INFO : Calculating calibration curves

23 Mar 2022 18:47:20,346 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 18:47:20,623 INFO : 68% Done

23 Mar 2022 18:47:20,628 INFO : Done calculating calibration curves.

23 Mar 2022 18:47:21,793 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 59

23 Mar 2022 18:47:21,795 INFO : 69% Done

23 Mar 2022 18:47:22,774 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 59

23 Mar 2022 18:47:23,773 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 59

23 Mar 2022 18:47:23,775 INFO : 70% Done

23 Mar 2022 18:47:24,755 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 59

23 Mar 2022 18:47:25,744 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 59

23 Mar 2022 18:47:26,732 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 59

23 Mar 2022 18:47:26,734 INFO : 71% Done

23 Mar 2022 18:47:27,715 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 59

23 Mar 2022 18:47:27,716 INFO : 72% Done

23 Mar 2022 18:47:28,715 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 59

23 Mar 2022 18:47:29,716 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 59

23 Mar 2022 18:47:29,718 INFO : 73% Done

23 Mar 2022 18:47:30,702 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 59

23 Mar 2022 18:47:31,704 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 59

23 Mar 2022 18:47:31,706 INFO : 74% Done

23 Mar 2022 18:47:32,689 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 59

23 Mar 2022 18:47:33,691 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 59

23 Mar 2022 18:47:33,693 INFO : 75% Done

23 Mar 2022 18:47:34,698 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 59

23 Mar 2022 18:47:35,693 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 59

23 Mar 2022 18:47:35,695 INFO : 76% Done

23 Mar 2022 18:47:36,686 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 59

23 Mar 2022 18:47:37,673 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 59

23 Mar 2022 18:47:37,675 INFO : 77% Done

23 Mar 2022 18:47:38,671 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 59

23 Mar 2022 18:47:39,658 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 59

23 Mar 2022 18:47:39,660 INFO : 78% Done

23 Mar 2022 18:47:40,665 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 59

23 Mar 2022 18:47:41,664 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 59

23 Mar 2022 18:47:41,666 INFO : 79% Done

23 Mar 2022 18:47:42,677 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 59

23 Mar 2022 18:47:43,666 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 59

23 Mar 2022 18:47:43,669 INFO : 80% Done

23 Mar 2022 18:47:44,680 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 59

23 Mar 2022 18:47:45,697 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 59

23 Mar 2022 18:47:45,699 INFO : 81% Done

23 Mar 2022 18:47:46,704 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 59

23 Mar 2022 18:47:47,706 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 59

23 Mar 2022 18:47:47,708 INFO : 82% Done

23 Mar 2022 18:47:48,684 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 59

23 Mar 2022 18:47:49,706 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 59

23 Mar 2022 18:47:49,708 INFO : 83% Done

23 Mar 2022 18:47:50,697 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 30 of 59

23 Mar 2022 18:47:51,690 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 31 of 59

23 Mar 2022 18:47:51,692 INFO : 84% Done

23 Mar 2022 18:47:52,701 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 32 of 59

23 Mar 2022 18:47:53,706 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 33 of 59

23 Mar 2022 18:47:53,708 INFO : 85% Done

23 Mar 2022 18:47:54,719 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 34 of 59

23 Mar 2022 18:47:55,702 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 35 of 59

23 Mar 2022 18:47:55,704 INFO : 86% Done

23 Mar 2022 18:47:56,721 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 36 of 59

23 Mar 2022 18:47:57,698 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 37 of 59

23 Mar 2022 18:47:57,700 INFO : 87% Done

23 Mar 2022 18:47:58,692 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 38 of 59

23 Mar 2022 18:47:59,665 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 39 of 59

23 Mar 2022 18:47:59,667 INFO : 88% Done

23 Mar 2022 18:48:00,663 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 40 of 59

23 Mar 2022 18:48:01,655 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 41 of 59

23 Mar 2022 18:48:01,657 INFO : 89% Done

23 Mar 2022 18:48:02,640 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 42 of 59

23 Mar 2022 18:48:03,638 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 43 of 59

23 Mar 2022 18:48:03,640 INFO : 90% Done

23 Mar 2022 18:48:04,620 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 44 of 59

23 Mar 2022 18:48:04,622 INFO : 91% Done

23 Mar 2022 18:48:05,620 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 45 of 59

23 Mar 2022 18:48:06,595 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 46 of 59

23 Mar 2022 18:48:07,586 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 47 of 59

23 Mar 2022 18:48:07,588 INFO : 92% Done

23 Mar 2022 18:48:08,574 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 48 of 59

23 Mar 2022 18:48:09,569 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-4.raw in QC folder. 49 of 59

23 Mar 2022 18:48:09,571 INFO : 93% Done

23 Mar 2022 18:48:10,560 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 50 of 59

23 Mar 2022 18:48:10,562 INFO : 94% Done

23 Mar 2022 18:48:11,544 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 51 of 59

23 Mar 2022 18:48:12,547 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 52 of 59

23 Mar 2022 18:48:13,529 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 53 of 59

23 Mar 2022 18:48:13,532 INFO : 95% Done

23 Mar 2022 18:48:14,549 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 54 of 59

23 Mar 2022 18:48:14,551 INFO : 96% Done

23 Mar 2022 18:48:15,541 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 55 of 59

23 Mar 2022 18:48:16,532 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 56 of 59

23 Mar 2022 18:48:16,534 INFO : 97% Done

23 Mar 2022 18:48:17,522 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 57 of 59

23 Mar 2022 18:48:18,508 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 58 of 59

23 Mar 2022 18:48:19,507 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 59 of 59

23 Mar 2022 18:48:19,509 INFO : 98% Done

23 Mar 2022 18:48:19,509 INFO : Done updating previously imported sample file data.

23 Mar 2022 18:48:20,002 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_21-22-13.sky.zip have been updated with newer data.

23 Mar 2022 18:48:20,002 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_21-22-13.sky.zip

23 Mar 2022 18:48:20,002 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_21-22-13

23 Mar 2022 18:48:20,002 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 18:48:20,041 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 18:48:20,146 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 18:48:20,184 INFO : Cleaning up temp tables

23 Mar 2022 18:48:20,416 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_21-47-03.sky.zip

23 Mar 2022 18:48:20,419 INFO : 100% Done

23 Mar 2022 18:48:20,467 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'