23 Mar 2022 18:22:28,623 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 18:22:28,629 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_21-22-13.sky.zip

23 Mar 2022 18:22:28,629 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 18:22:28,632 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 18:22:29,195 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 18:22:29,230 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 18:22:29,237 INFO : 2% Done

23 Mar 2022 18:22:29,431 DEBUG: Starting to load chromatogram headers

23 Mar 2022 18:22:29,438 DEBUG: Done loading chromatogram headers

23 Mar 2022 18:22:29,737 INFO : Inserting Precursors_Mix_1

23 Mar 2022 18:22:29,748 INFO : 4% Done

23 Mar 2022 18:22:29,806 INFO : 7% Done

23 Mar 2022 18:22:29,859 INFO : 10% Done

23 Mar 2022 18:22:29,909 INFO : 12% Done

23 Mar 2022 18:22:29,960 INFO : 14% Done

23 Mar 2022 18:22:30,010 INFO : 17% Done

23 Mar 2022 18:22:30,061 INFO : 20% Done

23 Mar 2022 18:22:30,109 INFO : 22% Done

23 Mar 2022 18:22:30,157 INFO : 25% Done

23 Mar 2022 18:22:30,206 INFO : 27% Done

23 Mar 2022 18:22:30,254 INFO : 30% Done

23 Mar 2022 18:22:30,299 INFO : 32% Done

23 Mar 2022 18:22:30,347 INFO : 35% Done

23 Mar 2022 18:22:30,393 INFO : 37% Done

23 Mar 2022 18:22:30,437 INFO : 40% Done

23 Mar 2022 18:22:30,480 INFO : 43% Done

23 Mar 2022 18:22:30,525 INFO : 45% Done

23 Mar 2022 18:22:30,573 INFO : 47% Done

23 Mar 2022 18:22:30,621 INFO : 50% Done

23 Mar 2022 18:22:30,670 INFO : 53% Done

23 Mar 2022 18:22:30,714 INFO : 55% Done

23 Mar 2022 18:22:30,758 INFO : 58% Done

23 Mar 2022 18:22:30,804 INFO : 60% Done

23 Mar 2022 18:22:30,841 DEBUG: Total molecules inserted: 23

23 Mar 2022 18:22:30,842 INFO : Done parsing Skyline document.

23 Mar 2022 18:22:30,847 INFO : No group comparisons found.

23 Mar 2022 18:22:30,847 INFO : Calculating calibration curves

23 Mar 2022 18:22:30,848 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 18:22:31,169 INFO : 68% Done

23 Mar 2022 18:22:31,175 INFO : Done calculating calibration curves.

23 Mar 2022 18:22:32,443 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 58

23 Mar 2022 18:22:32,446 INFO : 69% Done

23 Mar 2022 18:22:33,476 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 58

23 Mar 2022 18:22:34,521 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 58

23 Mar 2022 18:22:34,524 INFO : 70% Done

23 Mar 2022 18:22:35,520 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 58

23 Mar 2022 18:22:36,557 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 58

23 Mar 2022 18:22:36,559 INFO : 71% Done

23 Mar 2022 18:22:37,581 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 58

23 Mar 2022 18:22:38,642 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 58

23 Mar 2022 18:22:38,644 INFO : 72% Done

23 Mar 2022 18:22:39,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 58

23 Mar 2022 18:22:40,718 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 58

23 Mar 2022 18:22:40,721 INFO : 73% Done

23 Mar 2022 18:22:41,840 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 58

23 Mar 2022 18:22:42,966 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 58

23 Mar 2022 18:22:42,968 INFO : 74% Done

23 Mar 2022 18:22:44,082 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 58

23 Mar 2022 18:22:45,174 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 58

23 Mar 2022 18:22:45,176 INFO : 75% Done

23 Mar 2022 18:22:46,281 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 58

23 Mar 2022 18:22:47,310 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 58

23 Mar 2022 18:22:47,312 INFO : 76% Done

23 Mar 2022 18:22:48,418 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 58

23 Mar 2022 18:22:49,416 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 58

23 Mar 2022 18:22:49,419 INFO : 77% Done

23 Mar 2022 18:22:50,408 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 58

23 Mar 2022 18:22:51,474 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 58

23 Mar 2022 18:22:51,476 INFO : 78% Done

23 Mar 2022 18:22:52,531 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 58

23 Mar 2022 18:22:53,648 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 58

23 Mar 2022 18:22:53,650 INFO : 79% Done

23 Mar 2022 18:22:54,687 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 58

23 Mar 2022 18:22:55,769 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 58

23 Mar 2022 18:22:55,771 INFO : 80% Done

23 Mar 2022 18:22:56,779 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 58

23 Mar 2022 18:22:57,816 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 58

23 Mar 2022 18:22:57,818 INFO : 81% Done

23 Mar 2022 18:22:58,824 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 58

23 Mar 2022 18:22:58,825 INFO : 82% Done

23 Mar 2022 18:22:59,827 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 58

23 Mar 2022 18:23:00,835 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 58

23 Mar 2022 18:23:01,823 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 58

23 Mar 2022 18:23:01,824 INFO : 83% Done

23 Mar 2022 18:23:02,819 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 30 of 58

23 Mar 2022 18:23:02,821 INFO : 84% Done

23 Mar 2022 18:23:03,795 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 31 of 58

23 Mar 2022 18:23:04,806 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 32 of 58

23 Mar 2022 18:23:04,809 INFO : 85% Done

23 Mar 2022 18:23:05,816 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 33 of 58

23 Mar 2022 18:23:06,823 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 34 of 58

23 Mar 2022 18:23:06,825 INFO : 86% Done

23 Mar 2022 18:23:07,827 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 35 of 58

23 Mar 2022 18:23:08,837 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 36 of 58

23 Mar 2022 18:23:08,840 INFO : 87% Done

23 Mar 2022 18:23:09,861 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 37 of 58

23 Mar 2022 18:23:10,862 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 38 of 58

23 Mar 2022 18:23:10,865 INFO : 88% Done

23 Mar 2022 18:23:11,884 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 39 of 58

23 Mar 2022 18:23:12,866 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 40 of 58

23 Mar 2022 18:23:12,867 INFO : 89% Done

23 Mar 2022 18:23:13,905 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 41 of 58

23 Mar 2022 18:23:14,946 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 42 of 58

23 Mar 2022 18:23:14,948 INFO : 90% Done

23 Mar 2022 18:23:15,983 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 43 of 58

23 Mar 2022 18:23:17,033 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 44 of 58

23 Mar 2022 18:23:17,035 INFO : 91% Done

23 Mar 2022 18:23:18,037 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 45 of 58

23 Mar 2022 18:23:19,040 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 46 of 58

23 Mar 2022 18:23:19,042 INFO : 92% Done

23 Mar 2022 18:23:20,027 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 47 of 58

23 Mar 2022 18:23:21,029 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 48 of 58

23 Mar 2022 18:23:21,031 INFO : 93% Done

23 Mar 2022 18:23:22,018 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 49 of 58

23 Mar 2022 18:23:23,027 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 50 of 58

23 Mar 2022 18:23:23,029 INFO : 94% Done

23 Mar 2022 18:23:24,019 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 51 of 58

23 Mar 2022 18:23:25,024 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 52 of 58

23 Mar 2022 18:23:25,027 INFO : 95% Done

23 Mar 2022 18:23:26,050 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 53 of 58

23 Mar 2022 18:23:27,046 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 54 of 58

23 Mar 2022 18:23:27,048 INFO : 96% Done

23 Mar 2022 18:23:28,066 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 55 of 58

23 Mar 2022 18:23:28,067 INFO : 97% Done

23 Mar 2022 18:23:29,056 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 56 of 58

23 Mar 2022 18:23:30,085 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 57 of 58

23 Mar 2022 18:23:31,082 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-3.raw in QC folder. 58 of 58

23 Mar 2022 18:23:31,085 INFO : 98% Done

23 Mar 2022 18:23:31,085 INFO : Done updating previously imported sample file data.

23 Mar 2022 18:23:31,662 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-57-17.sky.zip have been updated with newer data.

23 Mar 2022 18:23:31,662 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-57-17.sky.zip

23 Mar 2022 18:23:31,662 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-57-17

23 Mar 2022 18:23:31,662 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 18:23:31,707 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 18:23:31,817 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 18:23:31,861 INFO : Cleaning up temp tables

23 Mar 2022 18:23:32,087 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_21-22-13.sky.zip

23 Mar 2022 18:23:32,090 INFO : 100% Done

23 Mar 2022 18:23:32,119 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'