23 Mar 2022 17:57:32,128 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 17:57:32,133 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-57-17.sky.zip

23 Mar 2022 17:57:32,134 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 17:57:32,137 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 17:57:32,712 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 17:57:32,749 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 17:57:32,762 INFO : 2% Done

23 Mar 2022 17:57:33,009 DEBUG: Starting to load chromatogram headers

23 Mar 2022 17:57:33,017 DEBUG: Done loading chromatogram headers

23 Mar 2022 17:57:33,346 INFO : Inserting Precursors_Mix_1

23 Mar 2022 17:57:33,364 INFO : 4% Done

23 Mar 2022 17:57:33,427 INFO : 7% Done

23 Mar 2022 17:57:33,483 INFO : 10% Done

23 Mar 2022 17:57:33,533 INFO : 12% Done

23 Mar 2022 17:57:33,582 INFO : 14% Done

23 Mar 2022 17:57:33,634 INFO : 17% Done

23 Mar 2022 17:57:33,683 INFO : 20% Done

23 Mar 2022 17:57:33,733 INFO : 22% Done

23 Mar 2022 17:57:33,788 INFO : 25% Done

23 Mar 2022 17:57:33,836 INFO : 27% Done

23 Mar 2022 17:57:33,884 INFO : 30% Done

23 Mar 2022 17:57:33,929 INFO : 32% Done

23 Mar 2022 17:57:33,976 INFO : 35% Done

23 Mar 2022 17:57:34,020 INFO : 37% Done

23 Mar 2022 17:57:34,068 INFO : 40% Done

23 Mar 2022 17:57:34,115 INFO : 43% Done

23 Mar 2022 17:57:34,162 INFO : 45% Done

23 Mar 2022 17:57:34,208 INFO : 48% Done

23 Mar 2022 17:57:34,252 INFO : 50% Done

23 Mar 2022 17:57:34,297 INFO : 53% Done

23 Mar 2022 17:57:34,341 INFO : 55% Done

23 Mar 2022 17:57:34,385 INFO : 58% Done

23 Mar 2022 17:57:34,432 INFO : 60% Done

23 Mar 2022 17:57:34,469 DEBUG: Total molecules inserted: 23

23 Mar 2022 17:57:34,470 INFO : Done parsing Skyline document.

23 Mar 2022 17:57:34,475 INFO : No group comparisons found.

23 Mar 2022 17:57:34,475 INFO : Calculating calibration curves

23 Mar 2022 17:57:34,476 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 17:57:34,848 INFO : 68% Done

23 Mar 2022 17:57:34,853 INFO : Done calculating calibration curves.

23 Mar 2022 17:57:36,053 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 57

23 Mar 2022 17:57:36,055 INFO : 69% Done

23 Mar 2022 17:57:37,043 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 57

23 Mar 2022 17:57:38,031 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 57

23 Mar 2022 17:57:38,033 INFO : 70% Done

23 Mar 2022 17:57:39,009 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 57

23 Mar 2022 17:57:39,992 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 57

23 Mar 2022 17:57:39,995 INFO : 71% Done

23 Mar 2022 17:57:40,976 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 57

23 Mar 2022 17:57:41,960 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 57

23 Mar 2022 17:57:41,962 INFO : 72% Done

23 Mar 2022 17:57:42,946 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 57

23 Mar 2022 17:57:43,928 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 57

23 Mar 2022 17:57:43,930 INFO : 73% Done

23 Mar 2022 17:57:44,922 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 57

23 Mar 2022 17:57:45,910 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 57

23 Mar 2022 17:57:45,912 INFO : 74% Done

23 Mar 2022 17:57:46,956 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 57

23 Mar 2022 17:57:47,964 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 57

23 Mar 2022 17:57:47,966 INFO : 75% Done

23 Mar 2022 17:57:48,979 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 57

23 Mar 2022 17:57:48,982 INFO : 76% Done

23 Mar 2022 17:57:50,002 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 57

23 Mar 2022 17:57:50,989 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 57

23 Mar 2022 17:57:51,985 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 57

23 Mar 2022 17:57:51,987 INFO : 77% Done

23 Mar 2022 17:57:52,966 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 57

23 Mar 2022 17:57:52,969 INFO : 78% Done

23 Mar 2022 17:57:53,970 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 57

23 Mar 2022 17:57:54,953 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 57

23 Mar 2022 17:57:54,955 INFO : 79% Done

23 Mar 2022 17:57:55,934 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 57

23 Mar 2022 17:57:56,917 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 57

23 Mar 2022 17:57:56,919 INFO : 80% Done

23 Mar 2022 17:57:57,894 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 57

23 Mar 2022 17:57:58,888 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 57

23 Mar 2022 17:57:58,890 INFO : 81% Done

23 Mar 2022 17:57:59,870 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 57

23 Mar 2022 17:58:00,858 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 57

23 Mar 2022 17:58:00,860 INFO : 82% Done

23 Mar 2022 17:58:01,851 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 57

23 Mar 2022 17:58:02,845 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 57

23 Mar 2022 17:58:02,847 INFO : 83% Done

23 Mar 2022 17:58:03,845 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 57

23 Mar 2022 17:58:04,828 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 30 of 57

23 Mar 2022 17:58:04,830 INFO : 84% Done

23 Mar 2022 17:58:05,835 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 31 of 57

23 Mar 2022 17:58:06,832 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 32 of 57

23 Mar 2022 17:58:06,835 INFO : 85% Done

23 Mar 2022 17:58:07,939 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-2.raw in QC folder. 33 of 57

23 Mar 2022 17:58:09,067 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 34 of 57

23 Mar 2022 17:58:09,070 INFO : 86% Done

23 Mar 2022 17:58:10,180 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 35 of 57

23 Mar 2022 17:58:11,190 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 36 of 57

23 Mar 2022 17:58:11,192 INFO : 87% Done

23 Mar 2022 17:58:12,172 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 37 of 57

23 Mar 2022 17:58:12,174 INFO : 88% Done

23 Mar 2022 17:58:13,221 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 38 of 57

23 Mar 2022 17:58:14,242 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 39 of 57

23 Mar 2022 17:58:15,233 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 40 of 57

23 Mar 2022 17:58:15,236 INFO : 89% Done

23 Mar 2022 17:58:16,222 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 41 of 57

23 Mar 2022 17:58:16,224 INFO : 90% Done

23 Mar 2022 17:58:17,216 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 42 of 57

23 Mar 2022 17:58:18,212 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 43 of 57

23 Mar 2022 17:58:18,214 INFO : 91% Done

23 Mar 2022 17:58:19,196 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 44 of 57

23 Mar 2022 17:58:20,192 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 45 of 57

23 Mar 2022 17:58:20,194 INFO : 92% Done

23 Mar 2022 17:58:21,180 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 46 of 57

23 Mar 2022 17:58:22,176 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 47 of 57

23 Mar 2022 17:58:22,178 INFO : 93% Done

23 Mar 2022 17:58:23,166 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 48 of 57

23 Mar 2022 17:58:24,155 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 49 of 57

23 Mar 2022 17:58:24,158 INFO : 94% Done

23 Mar 2022 17:58:25,141 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 50 of 57

23 Mar 2022 17:58:26,134 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 51 of 57

23 Mar 2022 17:58:26,136 INFO : 95% Done

23 Mar 2022 17:58:27,138 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 52 of 57

23 Mar 2022 17:58:28,115 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 53 of 57

23 Mar 2022 17:58:28,116 INFO : 96% Done

23 Mar 2022 17:58:29,101 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 54 of 57

23 Mar 2022 17:58:29,103 INFO : 97% Done

23 Mar 2022 17:58:30,089 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 55 of 57

23 Mar 2022 17:58:31,066 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 56 of 57

23 Mar 2022 17:58:32,047 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 57 of 57

23 Mar 2022 17:58:32,049 INFO : 98% Done

23 Mar 2022 17:58:32,049 INFO : Done updating previously imported sample file data.

23 Mar 2022 17:58:32,584 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-32-29.sky.zip have been updated with newer data.

23 Mar 2022 17:58:32,584 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-32-29.sky.zip

23 Mar 2022 17:58:32,584 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-32-29

23 Mar 2022 17:58:32,584 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 17:58:32,625 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 17:58:32,728 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 17:58:32,765 INFO : Cleaning up temp tables

23 Mar 2022 17:58:33,000 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-57-17.sky.zip

23 Mar 2022 17:58:33,002 INFO : 100% Done

23 Mar 2022 17:58:33,032 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'