23 Mar 2022 17:32:44,012 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 17:32:44,015 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-32-29.sky.zip

23 Mar 2022 17:32:44,016 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 17:32:44,018 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 17:32:44,606 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 17:32:44,637 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 17:32:44,644 INFO : 2% Done

23 Mar 2022 17:32:44,841 DEBUG: Starting to load chromatogram headers

23 Mar 2022 17:32:44,848 DEBUG: Done loading chromatogram headers

23 Mar 2022 17:32:45,152 INFO : Inserting Precursors_Mix_1

23 Mar 2022 17:32:45,163 INFO : 4% Done

23 Mar 2022 17:32:45,221 INFO : 7% Done

23 Mar 2022 17:32:45,271 INFO : 10% Done

23 Mar 2022 17:32:45,323 INFO : 12% Done

23 Mar 2022 17:32:45,373 INFO : 14% Done

23 Mar 2022 17:32:45,420 INFO : 17% Done

23 Mar 2022 17:32:45,472 INFO : 20% Done

23 Mar 2022 17:32:45,521 INFO : 22% Done

23 Mar 2022 17:32:45,568 INFO : 25% Done

23 Mar 2022 17:32:45,616 INFO : 27% Done

23 Mar 2022 17:32:45,662 INFO : 30% Done

23 Mar 2022 17:32:45,705 INFO : 32% Done

23 Mar 2022 17:32:45,750 INFO : 35% Done

23 Mar 2022 17:32:45,793 INFO : 37% Done

23 Mar 2022 17:32:45,836 INFO : 40% Done

23 Mar 2022 17:32:45,878 INFO : 43% Done

23 Mar 2022 17:32:45,920 INFO : 45% Done

23 Mar 2022 17:32:45,964 INFO : 47% Done

23 Mar 2022 17:32:46,007 INFO : 50% Done

23 Mar 2022 17:32:46,050 INFO : 53% Done

23 Mar 2022 17:32:46,092 INFO : 55% Done

23 Mar 2022 17:32:46,135 INFO : 58% Done

23 Mar 2022 17:32:46,180 INFO : 60% Done

23 Mar 2022 17:32:46,216 DEBUG: Total molecules inserted: 23

23 Mar 2022 17:32:46,218 INFO : Done parsing Skyline document.

23 Mar 2022 17:32:46,222 INFO : No group comparisons found.

23 Mar 2022 17:32:46,222 INFO : Calculating calibration curves

23 Mar 2022 17:32:46,223 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 17:32:46,499 INFO : 68% Done

23 Mar 2022 17:32:46,506 INFO : Done calculating calibration curves.

23 Mar 2022 17:32:47,691 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 56

23 Mar 2022 17:32:47,693 INFO : 69% Done

23 Mar 2022 17:32:48,679 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 56

23 Mar 2022 17:32:49,677 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 56

23 Mar 2022 17:32:49,680 INFO : 70% Done

23 Mar 2022 17:32:50,684 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 56

23 Mar 2022 17:32:51,684 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 56

23 Mar 2022 17:32:51,686 INFO : 71% Done

23 Mar 2022 17:32:52,673 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 56

23 Mar 2022 17:32:53,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 56

23 Mar 2022 17:32:53,681 INFO : 72% Done

23 Mar 2022 17:32:54,679 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 56

23 Mar 2022 17:32:55,660 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 56

23 Mar 2022 17:32:55,662 INFO : 73% Done

23 Mar 2022 17:32:56,682 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 56

23 Mar 2022 17:32:57,665 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 56

23 Mar 2022 17:32:57,668 INFO : 74% Done

23 Mar 2022 17:32:58,666 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 56

23 Mar 2022 17:32:59,663 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 56

23 Mar 2022 17:32:59,665 INFO : 75% Done

23 Mar 2022 17:33:00,650 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 56

23 Mar 2022 17:33:00,653 INFO : 76% Done

23 Mar 2022 17:33:01,640 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 56

23 Mar 2022 17:33:02,655 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 56

23 Mar 2022 17:33:02,657 INFO : 77% Done

23 Mar 2022 17:33:03,689 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 56

23 Mar 2022 17:33:04,668 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 56

23 Mar 2022 17:33:04,670 INFO : 78% Done

23 Mar 2022 17:33:05,716 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 56

23 Mar 2022 17:33:06,702 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 56

23 Mar 2022 17:33:06,704 INFO : 79% Done

23 Mar 2022 17:33:07,698 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 56

23 Mar 2022 17:33:08,704 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 56

23 Mar 2022 17:33:08,706 INFO : 80% Done

23 Mar 2022 17:33:09,705 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 56

23 Mar 2022 17:33:10,703 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 56

23 Mar 2022 17:33:10,705 INFO : 81% Done

23 Mar 2022 17:33:11,705 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 56

23 Mar 2022 17:33:11,707 INFO : 82% Done

23 Mar 2022 17:33:12,711 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 56

23 Mar 2022 17:33:13,690 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 56

23 Mar 2022 17:33:14,696 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 56

23 Mar 2022 17:33:14,699 INFO : 83% Done

23 Mar 2022 17:33:15,680 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 56

23 Mar 2022 17:33:15,682 INFO : 84% Done

23 Mar 2022 17:33:16,711 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 30 of 56

23 Mar 2022 17:33:17,735 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 31 of 56

23 Mar 2022 17:33:17,738 INFO : 85% Done

23 Mar 2022 17:33:18,740 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 32 of 56

23 Mar 2022 17:33:19,750 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 33 of 56

23 Mar 2022 17:33:19,752 INFO : 86% Done

23 Mar 2022 17:33:20,749 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Orbitrap_240_800_CON_PFAS-1.raw in QC folder. 34 of 56

23 Mar 2022 17:33:21,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 35 of 56

23 Mar 2022 17:33:21,748 INFO : 87% Done

23 Mar 2022 17:33:22,724 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 36 of 56

23 Mar 2022 17:33:23,724 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 37 of 56

23 Mar 2022 17:33:23,726 INFO : 88% Done

23 Mar 2022 17:33:24,728 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 38 of 56

23 Mar 2022 17:33:25,736 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 39 of 56

23 Mar 2022 17:33:25,738 INFO : 89% Done

23 Mar 2022 17:33:26,757 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 40 of 56

23 Mar 2022 17:33:27,726 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 41 of 56

23 Mar 2022 17:33:27,729 INFO : 90% Done

23 Mar 2022 17:33:28,717 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 42 of 56

23 Mar 2022 17:33:28,719 INFO : 91% Done

23 Mar 2022 17:33:29,705 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 43 of 56

23 Mar 2022 17:33:30,695 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 44 of 56

23 Mar 2022 17:33:30,698 INFO : 92% Done

23 Mar 2022 17:33:31,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 45 of 56

23 Mar 2022 17:33:32,680 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 46 of 56

23 Mar 2022 17:33:32,682 INFO : 93% Done

23 Mar 2022 17:33:33,670 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 47 of 56

23 Mar 2022 17:33:34,651 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 48 of 56

23 Mar 2022 17:33:34,653 INFO : 94% Done

23 Mar 2022 17:33:35,650 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 49 of 56

23 Mar 2022 17:33:36,625 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 50 of 56

23 Mar 2022 17:33:36,627 INFO : 95% Done

23 Mar 2022 17:33:37,614 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 51 of 56

23 Mar 2022 17:33:38,601 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 52 of 56

23 Mar 2022 17:33:38,603 INFO : 96% Done

23 Mar 2022 17:33:39,592 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 53 of 56

23 Mar 2022 17:33:39,594 INFO : 97% Done

23 Mar 2022 17:33:40,573 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 54 of 56

23 Mar 2022 17:33:41,570 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 55 of 56

23 Mar 2022 17:33:42,560 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 56 of 56

23 Mar 2022 17:33:42,562 INFO : 98% Done

23 Mar 2022 17:33:42,562 INFO : Done updating previously imported sample file data.

23 Mar 2022 17:33:43,101 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-57-13.sky.zip have been updated with newer data.

23 Mar 2022 17:33:43,101 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-57-13.sky.zip

23 Mar 2022 17:33:43,101 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-57-13

23 Mar 2022 17:33:43,101 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 17:33:43,142 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 17:33:43,242 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 17:33:43,278 INFO : Cleaning up temp tables

23 Mar 2022 17:33:43,495 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_20-32-29.sky.zip

23 Mar 2022 17:33:43,497 INFO : 100% Done

23 Mar 2022 17:33:43,523 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'