23 Mar 2022 16:57:27,680 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 16:57:27,684 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-57-13.sky.zip

23 Mar 2022 16:57:27,685 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 16:57:27,690 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 16:57:28,243 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 16:57:28,295 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 16:57:28,304 INFO : 2% Done

23 Mar 2022 16:57:28,496 DEBUG: Starting to load chromatogram headers

23 Mar 2022 16:57:28,504 DEBUG: Done loading chromatogram headers

23 Mar 2022 16:57:28,810 INFO : Inserting Precursors_Mix_1

23 Mar 2022 16:57:28,822 INFO : 4% Done

23 Mar 2022 16:57:28,879 INFO : 7% Done

23 Mar 2022 16:57:28,932 INFO : 10% Done

23 Mar 2022 16:57:28,983 INFO : 12% Done

23 Mar 2022 16:57:29,039 INFO : 14% Done

23 Mar 2022 16:57:29,093 INFO : 17% Done

23 Mar 2022 16:57:29,142 INFO : 20% Done

23 Mar 2022 16:57:29,188 INFO : 22% Done

23 Mar 2022 16:57:29,238 INFO : 25% Done

23 Mar 2022 16:57:29,287 INFO : 27% Done

23 Mar 2022 16:57:29,335 INFO : 30% Done

23 Mar 2022 16:57:29,377 INFO : 32% Done

23 Mar 2022 16:57:29,421 INFO : 35% Done

23 Mar 2022 16:57:29,465 INFO : 37% Done

23 Mar 2022 16:57:29,509 INFO : 40% Done

23 Mar 2022 16:57:29,553 INFO : 43% Done

23 Mar 2022 16:57:29,596 INFO : 45% Done

23 Mar 2022 16:57:29,639 INFO : 47% Done

23 Mar 2022 16:57:29,682 INFO : 50% Done

23 Mar 2022 16:57:29,727 INFO : 53% Done

23 Mar 2022 16:57:29,771 INFO : 55% Done

23 Mar 2022 16:57:29,813 INFO : 58% Done

23 Mar 2022 16:57:29,859 INFO : 60% Done

23 Mar 2022 16:57:29,894 DEBUG: Total molecules inserted: 23

23 Mar 2022 16:57:29,895 INFO : Done parsing Skyline document.

23 Mar 2022 16:57:29,900 INFO : No group comparisons found.

23 Mar 2022 16:57:29,900 INFO : Calculating calibration curves

23 Mar 2022 16:57:29,901 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 16:57:30,183 INFO : 68% Done

23 Mar 2022 16:57:30,189 INFO : Done calculating calibration curves.

23 Mar 2022 16:57:31,452 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 55

23 Mar 2022 16:57:31,454 INFO : 69% Done

23 Mar 2022 16:57:32,432 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 55

23 Mar 2022 16:57:33,446 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 55

23 Mar 2022 16:57:33,448 INFO : 70% Done

23 Mar 2022 16:57:34,432 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 55

23 Mar 2022 16:57:35,417 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 55

23 Mar 2022 16:57:35,419 INFO : 71% Done

23 Mar 2022 16:57:36,405 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 55

23 Mar 2022 16:57:37,377 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 55

23 Mar 2022 16:57:37,380 INFO : 72% Done

23 Mar 2022 16:57:38,366 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 55

23 Mar 2022 16:57:38,368 INFO : 73% Done

23 Mar 2022 16:57:39,332 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 55

23 Mar 2022 16:57:40,316 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 55

23 Mar 2022 16:57:41,293 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 55

23 Mar 2022 16:57:41,295 INFO : 74% Done

23 Mar 2022 16:57:42,261 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 55

23 Mar 2022 16:57:42,263 INFO : 75% Done

23 Mar 2022 16:57:43,253 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 55

23 Mar 2022 16:57:44,221 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 55

23 Mar 2022 16:57:44,223 INFO : 76% Done

23 Mar 2022 16:57:45,213 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 55

23 Mar 2022 16:57:46,182 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 55

23 Mar 2022 16:57:46,184 INFO : 77% Done

23 Mar 2022 16:57:47,183 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 55

23 Mar 2022 16:57:48,163 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 55

23 Mar 2022 16:57:48,165 INFO : 78% Done

23 Mar 2022 16:57:49,138 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 55

23 Mar 2022 16:57:49,140 INFO : 79% Done

23 Mar 2022 16:57:50,126 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 55

23 Mar 2022 16:57:51,090 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 55

23 Mar 2022 16:57:52,084 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 55

23 Mar 2022 16:57:52,086 INFO : 80% Done

23 Mar 2022 16:57:53,049 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 55

23 Mar 2022 16:57:53,051 INFO : 81% Done

23 Mar 2022 16:57:54,024 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 55

23 Mar 2022 16:57:55,010 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 55

23 Mar 2022 16:57:55,012 INFO : 82% Done

23 Mar 2022 16:57:56,017 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 55

23 Mar 2022 16:57:57,010 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 55

23 Mar 2022 16:57:57,012 INFO : 83% Done

23 Mar 2022 16:57:57,974 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 55

23 Mar 2022 16:57:58,950 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 55

23 Mar 2022 16:57:58,952 INFO : 84% Done

23 Mar 2022 16:57:59,917 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank3.raw in QC folder. 30 of 55

23 Mar 2022 16:57:59,919 INFO : 85% Done

23 Mar 2022 16:58:00,888 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 31 of 55

23 Mar 2022 16:58:01,855 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 32 of 55

23 Mar 2022 16:58:02,814 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 33 of 55

23 Mar 2022 16:58:02,816 INFO : 86% Done

23 Mar 2022 16:58:03,796 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 34 of 55

23 Mar 2022 16:58:03,799 INFO : 87% Done

23 Mar 2022 16:58:04,756 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 35 of 55

23 Mar 2022 16:58:05,729 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 36 of 55

23 Mar 2022 16:58:05,731 INFO : 88% Done

23 Mar 2022 16:58:06,699 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 37 of 55

23 Mar 2022 16:58:07,668 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 38 of 55

23 Mar 2022 16:58:07,670 INFO : 89% Done

23 Mar 2022 16:58:08,631 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 39 of 55

23 Mar 2022 16:58:09,590 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 40 of 55

23 Mar 2022 16:58:09,592 INFO : 90% Done

23 Mar 2022 16:58:10,562 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 41 of 55

23 Mar 2022 16:58:10,564 INFO : 91% Done

23 Mar 2022 16:58:11,521 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 42 of 55

23 Mar 2022 16:58:12,489 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 43 of 55

23 Mar 2022 16:58:13,449 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 44 of 55

23 Mar 2022 16:58:13,450 INFO : 92% Done

23 Mar 2022 16:58:14,412 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 45 of 55

23 Mar 2022 16:58:14,414 INFO : 93% Done

23 Mar 2022 16:58:15,390 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 46 of 55

23 Mar 2022 16:58:16,351 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 47 of 55

23 Mar 2022 16:58:16,353 INFO : 94% Done

23 Mar 2022 16:58:17,332 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 48 of 55

23 Mar 2022 16:58:18,301 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 49 of 55

23 Mar 2022 16:58:18,303 INFO : 95% Done

23 Mar 2022 16:58:19,285 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 50 of 55

23 Mar 2022 16:58:20,276 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 51 of 55

23 Mar 2022 16:58:20,278 INFO : 96% Done

23 Mar 2022 16:58:21,246 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 52 of 55

23 Mar 2022 16:58:21,249 INFO : 97% Done

23 Mar 2022 16:58:22,225 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 53 of 55

23 Mar 2022 16:58:23,185 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank2.raw in QC folder. 54 of 55

23 Mar 2022 16:58:24,168 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 55 of 55

23 Mar 2022 16:58:24,170 INFO : 98% Done

23 Mar 2022 16:58:24,170 INFO : Done updating previously imported sample file data.

23 Mar 2022 16:58:24,804 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-42-39.sky.zip have been updated with newer data.

23 Mar 2022 16:58:24,804 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-42-39.sky.zip

23 Mar 2022 16:58:24,804 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-42-39

23 Mar 2022 16:58:24,805 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 16:58:24,845 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 16:58:24,944 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 16:58:24,980 INFO : Cleaning up temp tables

23 Mar 2022 16:58:25,181 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-57-13.sky.zip

23 Mar 2022 16:58:25,183 INFO : 100% Done

23 Mar 2022 16:58:25,213 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'