23 Mar 2022 16:17:48,852 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 16:17:48,856 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-17-35.sky.zip

23 Mar 2022 16:17:48,857 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 16:17:48,862 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 16:17:49,382 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 16:17:49,416 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 16:17:49,425 INFO : 2% Done

23 Mar 2022 16:17:49,607 DEBUG: Starting to load chromatogram headers

23 Mar 2022 16:17:49,613 DEBUG: Done loading chromatogram headers

23 Mar 2022 16:17:49,930 INFO : Inserting Precursors_Mix_1

23 Mar 2022 16:17:49,941 INFO : 4% Done

23 Mar 2022 16:17:49,999 INFO : 7% Done

23 Mar 2022 16:17:50,052 INFO : 10% Done

23 Mar 2022 16:17:50,103 INFO : 12% Done

23 Mar 2022 16:17:50,168 INFO : 14% Done

23 Mar 2022 16:17:50,233 INFO : 17% Done

23 Mar 2022 16:17:50,290 INFO : 20% Done

23 Mar 2022 16:17:50,342 INFO : 22% Done

23 Mar 2022 16:17:50,403 INFO : 25% Done

23 Mar 2022 16:17:50,467 INFO : 27% Done

23 Mar 2022 16:17:50,521 INFO : 30% Done

23 Mar 2022 16:17:50,575 INFO : 32% Done

23 Mar 2022 16:17:50,630 INFO : 35% Done

23 Mar 2022 16:17:50,677 INFO : 37% Done

23 Mar 2022 16:17:50,722 INFO : 40% Done

23 Mar 2022 16:17:50,774 INFO : 43% Done

23 Mar 2022 16:17:50,829 INFO : 45% Done

23 Mar 2022 16:17:50,886 INFO : 47% Done

23 Mar 2022 16:17:50,931 INFO : 50% Done

23 Mar 2022 16:17:50,975 INFO : 53% Done

23 Mar 2022 16:17:51,020 INFO : 55% Done

23 Mar 2022 16:17:51,061 INFO : 58% Done

23 Mar 2022 16:17:51,109 INFO : 60% Done

23 Mar 2022 16:17:51,144 DEBUG: Total molecules inserted: 23

23 Mar 2022 16:17:51,145 INFO : Done parsing Skyline document.

23 Mar 2022 16:17:51,150 INFO : No group comparisons found.

23 Mar 2022 16:17:51,150 INFO : Calculating calibration curves

23 Mar 2022 16:17:51,150 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 16:17:51,443 INFO : 68% Done

23 Mar 2022 16:17:51,448 INFO : Done calculating calibration curves.

23 Mar 2022 16:17:52,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 53

23 Mar 2022 16:17:52,642 INFO : 69% Done

23 Mar 2022 16:17:53,658 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 53

23 Mar 2022 16:17:54,678 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 53

23 Mar 2022 16:17:54,681 INFO : 70% Done

23 Mar 2022 16:17:55,665 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 53

23 Mar 2022 16:17:56,658 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 53

23 Mar 2022 16:17:56,660 INFO : 71% Done

23 Mar 2022 16:17:57,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 53

23 Mar 2022 16:17:58,648 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 53

23 Mar 2022 16:17:58,651 INFO : 72% Done

23 Mar 2022 16:17:59,636 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 53

23 Mar 2022 16:17:59,638 INFO : 73% Done

23 Mar 2022 16:18:00,599 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 53

23 Mar 2022 16:18:01,628 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 53

23 Mar 2022 16:18:01,632 INFO : 74% Done

23 Mar 2022 16:18:02,618 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 53

23 Mar 2022 16:18:03,634 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 53

23 Mar 2022 16:18:03,636 INFO : 75% Done

23 Mar 2022 16:18:04,645 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 53

23 Mar 2022 16:18:04,647 INFO : 76% Done

23 Mar 2022 16:18:05,695 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 53

23 Mar 2022 16:18:06,727 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 53

23 Mar 2022 16:18:07,726 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 53

23 Mar 2022 16:18:07,728 INFO : 77% Done

23 Mar 2022 16:18:08,724 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 53

23 Mar 2022 16:18:08,726 INFO : 78% Done

23 Mar 2022 16:18:09,691 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 53

23 Mar 2022 16:18:10,671 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 53

23 Mar 2022 16:18:10,673 INFO : 79% Done

23 Mar 2022 16:18:11,672 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 53

23 Mar 2022 16:18:12,653 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 53

23 Mar 2022 16:18:12,655 INFO : 80% Done

23 Mar 2022 16:18:13,640 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 53

23 Mar 2022 16:18:13,642 INFO : 81% Done

23 Mar 2022 16:18:14,608 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 53

23 Mar 2022 16:18:15,611 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 53

23 Mar 2022 16:18:15,613 INFO : 82% Done

23 Mar 2022 16:18:16,603 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 53

23 Mar 2022 16:18:17,623 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 53

23 Mar 2022 16:18:17,626 INFO : 83% Done

23 Mar 2022 16:18:18,644 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 53

23 Mar 2022 16:18:19,644 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 53

23 Mar 2022 16:18:19,647 INFO : 84% Done

23 Mar 2022 16:18:20,637 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 53

23 Mar 2022 16:18:20,639 INFO : 85% Done

23 Mar 2022 16:18:21,619 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 30 of 53

23 Mar 2022 16:18:22,611 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 31 of 53

23 Mar 2022 16:18:23,580 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 32 of 53

23 Mar 2022 16:18:23,582 INFO : 86% Done

23 Mar 2022 16:18:24,563 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 33 of 53

23 Mar 2022 16:18:24,565 INFO : 87% Done

23 Mar 2022 16:18:25,553 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 34 of 53

23 Mar 2022 16:18:26,528 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 35 of 53

23 Mar 2022 16:18:26,530 INFO : 88% Done

23 Mar 2022 16:18:27,528 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 36 of 53

23 Mar 2022 16:18:28,545 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 37 of 53

23 Mar 2022 16:18:28,547 INFO : 89% Done

23 Mar 2022 16:18:29,579 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 38 of 53

23 Mar 2022 16:18:29,580 INFO : 90% Done

23 Mar 2022 16:18:30,550 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 39 of 53

23 Mar 2022 16:18:31,530 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 40 of 53

23 Mar 2022 16:18:31,532 INFO : 91% Done

23 Mar 2022 16:18:32,504 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 41 of 53

23 Mar 2022 16:18:33,472 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 42 of 53

23 Mar 2022 16:18:33,474 INFO : 92% Done

23 Mar 2022 16:18:34,467 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 43 of 53

23 Mar 2022 16:18:35,453 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 44 of 53

23 Mar 2022 16:18:35,455 INFO : 93% Done

23 Mar 2022 16:18:36,458 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 45 of 53

23 Mar 2022 16:18:36,462 INFO : 94% Done

23 Mar 2022 16:18:37,449 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 46 of 53

23 Mar 2022 16:18:38,427 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_23_22_Blank1_20220323181702.raw in QC folder. 47 of 53

23 Mar 2022 16:18:38,429 INFO : 95% Done

23 Mar 2022 16:18:39,426 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 48 of 53

23 Mar 2022 16:18:40,422 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 49 of 53

23 Mar 2022 16:18:40,424 INFO : 96% Done

23 Mar 2022 16:18:41,430 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 50 of 53

23 Mar 2022 16:18:42,431 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 51 of 53

23 Mar 2022 16:18:42,433 INFO : 97% Done

23 Mar 2022 16:18:43,420 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 52 of 53

23 Mar 2022 16:18:44,383 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 53 of 53

23 Mar 2022 16:18:44,386 INFO : 98% Done

23 Mar 2022 16:18:44,386 INFO : Done updating previously imported sample file data.

23 Mar 2022 16:18:45,026 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_18-52-44.sky.zip have been updated with newer data.

23 Mar 2022 16:18:45,026 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_18-52-44.sky.zip

23 Mar 2022 16:18:45,026 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-23_18-52-44

23 Mar 2022 16:18:45,026 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 16:18:45,066 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 16:18:45,164 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 16:18:45,201 INFO : Cleaning up temp tables

23 Mar 2022 16:18:45,418 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_19-17-35.sky.zip

23 Mar 2022 16:18:45,421 INFO : 100% Done

23 Mar 2022 16:18:45,446 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'