23 Mar 2022 15:52:58,817 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Mar 2022 15:52:58,822 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_18-52-44.sky.zip

23 Mar 2022 15:52:58,822 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

23 Mar 2022 15:52:58,827 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

23 Mar 2022 15:52:59,386 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

23 Mar 2022 15:52:59,424 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

23 Mar 2022 15:52:59,441 INFO : 2% Done

23 Mar 2022 15:52:59,632 DEBUG: Starting to load chromatogram headers

23 Mar 2022 15:52:59,642 DEBUG: Done loading chromatogram headers

23 Mar 2022 15:52:59,955 INFO : Inserting Precursors_Mix_1

23 Mar 2022 15:52:59,973 INFO : 4% Done

23 Mar 2022 15:53:00,057 INFO : 7% Done

23 Mar 2022 15:53:00,118 INFO : 10% Done

23 Mar 2022 15:53:00,175 INFO : 12% Done

23 Mar 2022 15:53:00,232 INFO : 14% Done

23 Mar 2022 15:53:00,291 INFO : 17% Done

23 Mar 2022 15:53:00,346 INFO : 20% Done

23 Mar 2022 15:53:00,401 INFO : 22% Done

23 Mar 2022 15:53:00,455 INFO : 25% Done

23 Mar 2022 15:53:00,509 INFO : 27% Done

23 Mar 2022 15:53:00,561 INFO : 30% Done

23 Mar 2022 15:53:00,611 INFO : 32% Done

23 Mar 2022 15:53:00,665 INFO : 35% Done

23 Mar 2022 15:53:00,712 INFO : 37% Done

23 Mar 2022 15:53:00,757 INFO : 40% Done

23 Mar 2022 15:53:00,799 INFO : 43% Done

23 Mar 2022 15:53:00,847 INFO : 45% Done

23 Mar 2022 15:53:00,889 INFO : 47% Done

23 Mar 2022 15:53:00,934 INFO : 50% Done

23 Mar 2022 15:53:00,976 INFO : 53% Done

23 Mar 2022 15:53:01,021 INFO : 55% Done

23 Mar 2022 15:53:01,063 INFO : 58% Done

23 Mar 2022 15:53:01,110 INFO : 60% Done

23 Mar 2022 15:53:01,145 DEBUG: Total molecules inserted: 23

23 Mar 2022 15:53:01,145 INFO : Done parsing Skyline document.

23 Mar 2022 15:53:01,150 INFO : No group comparisons found.

23 Mar 2022 15:53:01,150 INFO : Calculating calibration curves

23 Mar 2022 15:53:01,151 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

23 Mar 2022 15:53:01,545 INFO : 68% Done

23 Mar 2022 15:53:01,553 INFO : Done calculating calibration curves.

23 Mar 2022 15:53:02,836 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 52

23 Mar 2022 15:53:02,838 INFO : 69% Done

23 Mar 2022 15:53:03,872 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 52

23 Mar 2022 15:53:04,929 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 52

23 Mar 2022 15:53:04,932 INFO : 70% Done

23 Mar 2022 15:53:05,912 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 52

23 Mar 2022 15:53:06,896 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 52

23 Mar 2022 15:53:06,898 INFO : 71% Done

23 Mar 2022 15:53:07,872 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 52

23 Mar 2022 15:53:07,875 INFO : 72% Done

23 Mar 2022 15:53:08,849 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 52

23 Mar 2022 15:53:09,829 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 52

23 Mar 2022 15:53:09,831 INFO : 73% Done

23 Mar 2022 15:53:10,797 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 52

23 Mar 2022 15:53:11,773 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 52

23 Mar 2022 15:53:11,776 INFO : 74% Done

23 Mar 2022 15:53:12,750 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 52

23 Mar 2022 15:53:13,722 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 52

23 Mar 2022 15:53:13,724 INFO : 75% Done

23 Mar 2022 15:53:14,695 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 52

23 Mar 2022 15:53:14,697 INFO : 76% Done

23 Mar 2022 15:53:15,670 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 52

23 Mar 2022 15:53:16,648 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 52

23 Mar 2022 15:53:16,650 INFO : 77% Done

23 Mar 2022 15:53:17,622 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 52

23 Mar 2022 15:53:18,599 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 52

23 Mar 2022 15:53:18,602 INFO : 78% Done

23 Mar 2022 15:53:19,569 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 52

23 Mar 2022 15:53:19,571 INFO : 79% Done

23 Mar 2022 15:53:20,542 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 52

23 Mar 2022 15:53:21,512 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 52

23 Mar 2022 15:53:22,479 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 52

23 Mar 2022 15:53:22,481 INFO : 80% Done

23 Mar 2022 15:53:23,453 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 52

23 Mar 2022 15:53:23,454 INFO : 81% Done

23 Mar 2022 15:53:24,423 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 52

23 Mar 2022 15:53:25,417 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 52

23 Mar 2022 15:53:25,420 INFO : 82% Done

23 Mar 2022 15:53:26,400 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 52

23 Mar 2022 15:53:27,386 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 52

23 Mar 2022 15:53:27,388 INFO : 83% Done

23 Mar 2022 15:53:28,363 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 52

23 Mar 2022 15:53:28,365 INFO : 84% Done

23 Mar 2022 15:53:29,349 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 52

23 Mar 2022 15:53:30,335 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 52

23 Mar 2022 15:53:30,338 INFO : 85% Done

23 Mar 2022 15:53:31,304 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 30 of 52

23 Mar 2022 15:53:32,276 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 31 of 52

23 Mar 2022 15:53:32,278 INFO : 86% Done

23 Mar 2022 15:53:33,245 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 32 of 52

23 Mar 2022 15:53:33,248 INFO : 87% Done

23 Mar 2022 15:53:34,230 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 33 of 52

23 Mar 2022 15:53:35,229 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 34 of 52

23 Mar 2022 15:53:35,231 INFO : 88% Done

23 Mar 2022 15:53:36,195 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 35 of 52

23 Mar 2022 15:53:37,168 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 36 of 52

23 Mar 2022 15:53:37,171 INFO : 89% Done

23 Mar 2022 15:53:38,127 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 37 of 52

23 Mar 2022 15:53:39,108 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304170042.raw in QC folder. 38 of 52

23 Mar 2022 15:53:39,111 INFO : 90% Done

23 Mar 2022 15:53:40,072 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 39 of 52

23 Mar 2022 15:53:40,074 INFO : 91% Done

23 Mar 2022 15:53:41,051 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 40 of 52

23 Mar 2022 15:53:42,023 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 41 of 52

23 Mar 2022 15:53:42,025 INFO : 92% Done

23 Mar 2022 15:53:43,002 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 42 of 52

23 Mar 2022 15:53:43,989 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 43 of 52

23 Mar 2022 15:53:43,991 INFO : 93% Done

23 Mar 2022 15:53:44,964 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Orbitrap_240_800_CON_PFAS.raw in QC folder. 44 of 52

23 Mar 2022 15:53:44,966 INFO : 94% Done

23 Mar 2022 15:53:45,948 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 45 of 52

23 Mar 2022 15:53:46,919 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 46 of 52

23 Mar 2022 15:53:47,896 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 47 of 52

23 Mar 2022 15:53:47,898 INFO : 95% Done

23 Mar 2022 15:53:48,872 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 48 of 52

23 Mar 2022 15:53:48,874 INFO : 96% Done

23 Mar 2022 15:53:49,847 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 49 of 52

23 Mar 2022 15:53:50,825 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 50 of 52

23 Mar 2022 15:53:50,827 INFO : 97% Done

23 Mar 2022 15:53:51,797 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 51 of 52

23 Mar 2022 15:53:52,779 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 52 of 52

23 Mar 2022 15:53:52,781 INFO : 98% Done

23 Mar 2022 15:53:52,782 INFO : Done updating previously imported sample file data.

23 Mar 2022 15:53:53,348 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-51-22.sky.zip have been updated with newer data.

23 Mar 2022 15:53:53,348 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-51-22.sky.zip

23 Mar 2022 15:53:53,348 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-51-22

23 Mar 2022 15:53:53,348 INFO : Creating and populating temp tables for Proportion values

23 Mar 2022 15:53:53,387 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Mar 2022 15:53:53,481 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Mar 2022 15:53:53,515 INFO : Cleaning up temp tables

23 Mar 2022 15:53:53,748 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-23_18-52-44.sky.zip

23 Mar 2022 15:53:53,752 INFO : 100% Done

23 Mar 2022 15:53:53,782 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'