04 Mar 2022 14:36:15,368 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

04 Mar 2022 14:36:15,370 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-36-02.sky.zip

04 Mar 2022 14:36:15,371 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

04 Mar 2022 14:36:15,375 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

04 Mar 2022 14:36:15,792 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

04 Mar 2022 14:36:15,915 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

04 Mar 2022 14:36:15,921 INFO : 2% Done

04 Mar 2022 14:36:16,081 DEBUG: Starting to load chromatogram headers

04 Mar 2022 14:36:16,087 DEBUG: Done loading chromatogram headers

04 Mar 2022 14:36:16,345 INFO : Inserting Precursors_Mix_1

04 Mar 2022 14:36:16,353 INFO : 4% Done

04 Mar 2022 14:36:16,398 INFO : 7% Done

04 Mar 2022 14:36:16,438 INFO : 10% Done

04 Mar 2022 14:36:16,476 INFO : 12% Done

04 Mar 2022 14:36:16,513 INFO : 14% Done

04 Mar 2022 14:36:16,551 INFO : 17% Done

04 Mar 2022 14:36:16,588 INFO : 20% Done

04 Mar 2022 14:36:16,624 INFO : 22% Done

04 Mar 2022 14:36:16,663 INFO : 25% Done

04 Mar 2022 14:36:16,699 INFO : 27% Done

04 Mar 2022 14:36:16,737 INFO : 30% Done

04 Mar 2022 14:36:16,772 INFO : 32% Done

04 Mar 2022 14:36:16,808 INFO : 35% Done

04 Mar 2022 14:36:16,845 INFO : 38% Done

04 Mar 2022 14:36:16,881 INFO : 40% Done

04 Mar 2022 14:36:16,915 INFO : 43% Done

04 Mar 2022 14:36:16,950 INFO : 45% Done

04 Mar 2022 14:36:16,986 INFO : 47% Done

04 Mar 2022 14:36:17,022 INFO : 50% Done

04 Mar 2022 14:36:17,057 INFO : 53% Done

04 Mar 2022 14:36:17,093 INFO : 55% Done

04 Mar 2022 14:36:17,129 INFO : 58% Done

04 Mar 2022 14:36:17,167 INFO : 60% Done

04 Mar 2022 14:36:17,196 DEBUG: Total molecules inserted: 23

04 Mar 2022 14:36:17,197 INFO : Done parsing Skyline document.

04 Mar 2022 14:36:17,201 INFO : No group comparisons found.

04 Mar 2022 14:36:17,201 INFO : Calculating calibration curves

04 Mar 2022 14:36:17,201 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

04 Mar 2022 14:36:17,434 INFO : 68% Done

04 Mar 2022 14:36:17,443 INFO : Done calculating calibration curves.

04 Mar 2022 14:36:18,625 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 50

04 Mar 2022 14:36:18,627 INFO : 69% Done

04 Mar 2022 14:36:19,578 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 50

04 Mar 2022 14:36:20,543 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 3 of 50

04 Mar 2022 14:36:20,547 INFO : 70% Done

04 Mar 2022 14:36:21,506 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 4 of 50

04 Mar 2022 14:36:22,461 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 5 of 50

04 Mar 2022 14:36:22,462 INFO : 71% Done

04 Mar 2022 14:36:23,434 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 6 of 50

04 Mar 2022 14:36:23,436 INFO : 72% Done

04 Mar 2022 14:36:24,384 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 7 of 50

04 Mar 2022 14:36:25,359 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 8 of 50

04 Mar 2022 14:36:25,361 INFO : 73% Done

04 Mar 2022 14:36:26,295 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 9 of 50

04 Mar 2022 14:36:27,266 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 10 of 50

04 Mar 2022 14:36:27,270 INFO : 74% Done

04 Mar 2022 14:36:28,215 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 11 of 50

04 Mar 2022 14:36:28,217 INFO : 75% Done

04 Mar 2022 14:36:29,174 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 12 of 50

04 Mar 2022 14:36:30,139 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 13 of 50

04 Mar 2022 14:36:30,140 INFO : 76% Done

04 Mar 2022 14:36:31,093 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 14 of 50

04 Mar 2022 14:36:32,071 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\03_04_22_Blank1_20220304163537.raw in QC folder. 15 of 50

04 Mar 2022 14:36:32,073 INFO : 77% Done

04 Mar 2022 14:36:33,023 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 16 of 50

04 Mar 2022 14:36:33,025 INFO : 78% Done

04 Mar 2022 14:36:34,009 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 17 of 50

04 Mar 2022 14:36:34,985 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 18 of 50

04 Mar 2022 14:36:34,987 INFO : 79% Done

04 Mar 2022 14:36:35,978 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 19 of 50

04 Mar 2022 14:36:36,950 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 20 of 50

04 Mar 2022 14:36:36,952 INFO : 80% Done

04 Mar 2022 14:36:37,935 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 21 of 50

04 Mar 2022 14:36:37,937 INFO : 81% Done

04 Mar 2022 14:36:38,903 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 22 of 50

04 Mar 2022 14:36:39,853 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 23 of 50

04 Mar 2022 14:36:39,855 INFO : 82% Done

04 Mar 2022 14:36:40,832 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 24 of 50

04 Mar 2022 14:36:41,774 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-2.raw in QC folder. 25 of 50

04 Mar 2022 14:36:41,776 INFO : 83% Done

04 Mar 2022 14:36:42,754 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 26 of 50

04 Mar 2022 14:36:42,755 INFO : 84% Done

04 Mar 2022 14:36:43,693 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 27 of 50

04 Mar 2022 14:36:44,662 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 28 of 50

04 Mar 2022 14:36:44,664 INFO : 85% Done

04 Mar 2022 14:36:45,617 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 29 of 50

04 Mar 2022 14:36:46,580 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 30 of 50

04 Mar 2022 14:36:46,582 INFO : 86% Done

04 Mar 2022 14:36:47,558 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 31 of 50

04 Mar 2022 14:36:47,560 INFO : 87% Done

04 Mar 2022 14:36:48,514 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-3.raw in QC folder. 32 of 50

04 Mar 2022 14:36:49,489 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 33 of 50

04 Mar 2022 14:36:49,490 INFO : 88% Done

04 Mar 2022 14:36:50,426 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 34 of 50

04 Mar 2022 14:36:51,409 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 35 of 50

04 Mar 2022 14:36:51,411 INFO : 89% Done

04 Mar 2022 14:36:52,355 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 36 of 50

04 Mar 2022 14:36:52,356 INFO : 90% Done

04 Mar 2022 14:36:53,333 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 37 of 50

04 Mar 2022 14:36:54,297 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 38 of 50

04 Mar 2022 14:36:54,299 INFO : 91% Done

04 Mar 2022 14:36:55,273 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 39 of 50

04 Mar 2022 14:36:56,243 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 40 of 50

04 Mar 2022 14:36:56,245 INFO : 92% Done

04 Mar 2022 14:36:57,187 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 41 of 50

04 Mar 2022 14:36:57,189 INFO : 93% Done

04 Mar 2022 14:36:58,178 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 42 of 50

04 Mar 2022 14:36:59,117 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 43 of 50

04 Mar 2022 14:36:59,119 INFO : 94% Done

04 Mar 2022 14:37:00,112 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 44 of 50

04 Mar 2022 14:37:01,059 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 45 of 50

04 Mar 2022 14:37:01,060 INFO : 95% Done

04 Mar 2022 14:37:02,015 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 46 of 50

04 Mar 2022 14:37:02,016 INFO : 96% Done

04 Mar 2022 14:37:02,965 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 47 of 50

04 Mar 2022 14:37:03,906 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 48 of 50

04 Mar 2022 14:37:03,908 INFO : 97% Done

04 Mar 2022 14:37:04,911 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 49 of 50

04 Mar 2022 14:37:05,866 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20220201_AutoQC-1_20220201144608.raw in QC folder. 50 of 50

04 Mar 2022 14:37:05,868 INFO : 98% Done

04 Mar 2022 14:37:05,868 INFO : Done updating previously imported sample file data.

04 Mar 2022 14:37:06,406 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-00-58.sky.zip have been updated with newer data.

04 Mar 2022 14:37:06,406 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-00-58.sky.zip

04 Mar 2022 14:37:06,406 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-00-58

04 Mar 2022 14:37:06,406 INFO : Creating and populating temp tables for Proportion values

04 Mar 2022 14:37:06,442 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

04 Mar 2022 14:37:06,532 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

04 Mar 2022 14:37:06,566 INFO : Cleaning up temp tables

04 Mar 2022 14:37:07,990 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-03-04_17-36-02.sky.zip

04 Mar 2022 14:37:07,992 INFO : 100% Done

04 Mar 2022 14:37:08,016 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'