01 Feb 2022 12:24:17,375 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

01 Feb 2022 12:24:17,383 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-02-01_15-24-05.sky.zip

01 Feb 2022 12:24:17,385 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

01 Feb 2022 12:24:17,391 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

01 Feb 2022 12:24:17,842 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

01 Feb 2022 12:24:17,864 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

01 Feb 2022 12:24:17,876 INFO : 2% Done

01 Feb 2022 12:24:18,041 DEBUG: Starting to load chromatogram headers

01 Feb 2022 12:24:18,048 DEBUG: Done loading chromatogram headers

01 Feb 2022 12:24:18,353 INFO : Inserting Precursors_Mix_1

01 Feb 2022 12:24:18,376 INFO : 4% Done

01 Feb 2022 12:24:18,455 INFO : 7% Done

01 Feb 2022 12:24:18,507 INFO : 10% Done

01 Feb 2022 12:24:18,554 INFO : 12% Done

01 Feb 2022 12:24:18,597 INFO : 14% Done

01 Feb 2022 12:24:18,637 INFO : 17% Done

01 Feb 2022 12:24:18,680 INFO : 20% Done

01 Feb 2022 12:24:18,721 INFO : 22% Done

01 Feb 2022 12:24:18,760 INFO : 25% Done

01 Feb 2022 12:24:18,804 INFO : 28% Done

01 Feb 2022 12:24:18,843 INFO : 30% Done

01 Feb 2022 12:24:18,882 INFO : 32% Done

01 Feb 2022 12:24:18,920 INFO : 35% Done

01 Feb 2022 12:24:18,960 INFO : 37% Done

01 Feb 2022 12:24:18,998 INFO : 40% Done

01 Feb 2022 12:24:19,036 INFO : 43% Done

01 Feb 2022 12:24:19,074 INFO : 45% Done

01 Feb 2022 12:24:19,112 INFO : 48% Done

01 Feb 2022 12:24:19,150 INFO : 50% Done

01 Feb 2022 12:24:19,186 INFO : 53% Done

01 Feb 2022 12:24:19,222 INFO : 55% Done

01 Feb 2022 12:24:19,260 INFO : 58% Done

01 Feb 2022 12:24:19,300 INFO : 60% Done

01 Feb 2022 12:24:19,331 DEBUG: Total molecules inserted: 23

01 Feb 2022 12:24:19,333 INFO : Done parsing Skyline document.

01 Feb 2022 12:24:19,338 INFO : No group comparisons found.

01 Feb 2022 12:24:19,338 INFO : Calculating calibration curves

01 Feb 2022 12:24:19,339 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

01 Feb 2022 12:24:19,643 INFO : 68% Done

01 Feb 2022 12:24:19,649 INFO : Done calculating calibration curves.

01 Feb 2022 12:24:20,907 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 46

01 Feb 2022 12:24:20,910 INFO : 69% Done

01 Feb 2022 12:24:21,890 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 46

01 Feb 2022 12:24:22,876 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 3 of 46

01 Feb 2022 12:24:22,878 INFO : 70% Done

01 Feb 2022 12:24:23,825 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 46

01 Feb 2022 12:24:23,827 INFO : 71% Done

01 Feb 2022 12:24:24,795 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 5 of 46

01 Feb 2022 12:24:25,782 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 6 of 46

01 Feb 2022 12:24:25,785 INFO : 72% Done

01 Feb 2022 12:24:26,755 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 46

01 Feb 2022 12:24:26,757 INFO : 73% Done

01 Feb 2022 12:24:27,745 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 46

01 Feb 2022 12:24:28,716 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 9 of 46

01 Feb 2022 12:24:28,718 INFO : 74% Done

01 Feb 2022 12:24:29,699 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 10 of 46

01 Feb 2022 12:24:29,702 INFO : 75% Done

01 Feb 2022 12:24:30,639 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 11 of 46

01 Feb 2022 12:24:31,608 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 12 of 46

01 Feb 2022 12:24:31,610 INFO : 76% Done

01 Feb 2022 12:24:32,567 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 46

01 Feb 2022 12:24:33,538 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 46

01 Feb 2022 12:24:33,541 INFO : 77% Done

01 Feb 2022 12:24:34,528 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 46

01 Feb 2022 12:24:34,529 INFO : 78% Done

01 Feb 2022 12:24:35,512 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 46

01 Feb 2022 12:24:35,514 INFO : 79% Done

01 Feb 2022 12:24:36,550 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 17 of 46

01 Feb 2022 12:24:37,642 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 18 of 46

01 Feb 2022 12:24:37,645 INFO : 80% Done

01 Feb 2022 12:24:38,681 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 19 of 46

01 Feb 2022 12:24:39,638 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 20 of 46

01 Feb 2022 12:24:39,640 INFO : 81% Done

01 Feb 2022 12:24:40,604 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 21 of 46

01 Feb 2022 12:24:40,606 INFO : 82% Done

01 Feb 2022 12:24:41,592 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 22 of 46

01 Feb 2022 12:24:42,566 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210903_800CON.raw in QC folder. 23 of 46

01 Feb 2022 12:24:42,568 INFO : 83% Done

01 Feb 2022 12:24:43,556 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 24 of 46

01 Feb 2022 12:24:43,558 INFO : 84% Done

01 Feb 2022 12:24:44,509 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 25 of 46

01 Feb 2022 12:24:45,505 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 26 of 46

01 Feb 2022 12:24:45,507 INFO : 85% Done

01 Feb 2022 12:24:46,480 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210901_800CON_small.raw in QC folder. 27 of 46

01 Feb 2022 12:24:46,482 INFO : 86% Done

01 Feb 2022 12:24:47,469 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 28 of 46

01 Feb 2022 12:24:48,481 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 29 of 46

01 Feb 2022 12:24:48,483 INFO : 87% Done

01 Feb 2022 12:24:49,465 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 30 of 46

01 Feb 2022 12:24:49,467 INFO : 88% Done

01 Feb 2022 12:24:50,460 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 31 of 46

01 Feb 2022 12:24:51,450 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 32 of 46

01 Feb 2022 12:24:51,452 INFO : 89% Done

01 Feb 2022 12:24:52,435 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 33 of 46

01 Feb 2022 12:24:52,436 INFO : 90% Done

01 Feb 2022 12:24:53,387 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 34 of 46

01 Feb 2022 12:24:54,387 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 35 of 46

01 Feb 2022 12:24:54,389 INFO : 91% Done

01 Feb 2022 12:24:55,373 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210826_800CON.raw in QC folder. 36 of 46

01 Feb 2022 12:24:56,504 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 37 of 46

01 Feb 2022 12:24:56,506 INFO : 92% Done

01 Feb 2022 12:24:57,504 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 38 of 46

01 Feb 2022 12:24:57,507 INFO : 93% Done

01 Feb 2022 12:24:58,518 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 39 of 46

01 Feb 2022 12:24:58,520 INFO : 94% Done

01 Feb 2022 12:24:59,518 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 40 of 46

01 Feb 2022 12:25:00,496 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 41 of 46

01 Feb 2022 12:25:00,498 INFO : 95% Done

01 Feb 2022 12:25:01,491 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 42 of 46

01 Feb 2022 12:25:02,467 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 43 of 46

01 Feb 2022 12:25:02,469 INFO : 96% Done

01 Feb 2022 12:25:03,464 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 44 of 46

01 Feb 2022 12:25:03,467 INFO : 97% Done

01 Feb 2022 12:25:04,447 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 45 of 46

01 Feb 2022 12:25:05,428 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 46 of 46

01 Feb 2022 12:25:05,430 INFO : 98% Done

01 Feb 2022 12:25:05,430 INFO : Done updating previously imported sample file data.

01 Feb 2022 12:25:06,003 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-09-03_19-35-02.sky.zip have been updated with newer data.

01 Feb 2022 12:25:06,003 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-09-03_19-35-02.sky.zip

01 Feb 2022 12:25:06,004 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-09-03_19-35-02

01 Feb 2022 12:25:06,004 INFO : Creating and populating temp tables for Proportion values

01 Feb 2022 12:25:06,037 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

01 Feb 2022 12:25:06,121 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

01 Feb 2022 12:25:06,152 INFO : Cleaning up temp tables

01 Feb 2022 12:25:06,365 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2022-02-01_15-24-05.sky.zip

01 Feb 2022 12:25:06,368 INFO : 100% Done

01 Feb 2022 12:25:06,400 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'