26 Aug 2021 14:21:06,448 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

26 Aug 2021 14:21:06,457 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-08-26_17-21-01.sky.zip

26 Aug 2021 14:21:06,458 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

26 Aug 2021 14:21:06,463 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

26 Aug 2021 14:21:06,850 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

26 Aug 2021 14:21:06,878 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

26 Aug 2021 14:21:06,890 INFO : 2% Done

26 Aug 2021 14:21:07,063 DEBUG: Starting to load chromatogram headers

26 Aug 2021 14:21:07,071 DEBUG: Done loading chromatogram headers

26 Aug 2021 14:21:07,286 INFO : Inserting Precursors_Mix_1

26 Aug 2021 14:21:07,299 INFO : 4% Done

26 Aug 2021 14:21:07,346 INFO : 7% Done

26 Aug 2021 14:21:07,387 INFO : 10% Done

26 Aug 2021 14:21:07,431 INFO : 12% Done

26 Aug 2021 14:21:07,474 INFO : 14% Done

26 Aug 2021 14:21:07,517 INFO : 17% Done

26 Aug 2021 14:21:07,559 INFO : 20% Done

26 Aug 2021 14:21:07,602 INFO : 22% Done

26 Aug 2021 14:21:07,645 INFO : 25% Done

26 Aug 2021 14:21:07,691 INFO : 28% Done

26 Aug 2021 14:21:07,743 INFO : 30% Done

26 Aug 2021 14:21:07,790 INFO : 32% Done

26 Aug 2021 14:21:07,836 INFO : 35% Done

26 Aug 2021 14:21:07,884 INFO : 37% Done

26 Aug 2021 14:21:07,928 INFO : 40% Done

26 Aug 2021 14:21:07,975 INFO : 43% Done

26 Aug 2021 14:21:08,016 INFO : 45% Done

26 Aug 2021 14:21:08,064 INFO : 48% Done

26 Aug 2021 14:21:08,116 INFO : 50% Done

26 Aug 2021 14:21:08,165 INFO : 53% Done

26 Aug 2021 14:21:08,208 INFO : 55% Done

26 Aug 2021 14:21:08,249 INFO : 58% Done

26 Aug 2021 14:21:08,293 INFO : 60% Done

26 Aug 2021 14:21:08,323 DEBUG: Total molecules inserted: 23

26 Aug 2021 14:21:08,324 INFO : Done parsing Skyline document.

26 Aug 2021 14:21:08,329 INFO : No group comparisons found.

26 Aug 2021 14:21:08,329 INFO : Calculating calibration curves

26 Aug 2021 14:21:08,330 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

26 Aug 2021 14:21:08,706 INFO : 68% Done

26 Aug 2021 14:21:08,712 INFO : Done calculating calibration curves.

26 Aug 2021 14:21:10,093 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 43

26 Aug 2021 14:21:10,096 INFO : 69% Done

26 Aug 2021 14:21:11,203 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 43

26 Aug 2021 14:21:11,205 INFO : 70% Done

26 Aug 2021 14:21:12,324 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 3 of 43

26 Aug 2021 14:21:13,426 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 43

26 Aug 2021 14:21:13,429 INFO : 71% Done

26 Aug 2021 14:21:14,543 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 5 of 43

26 Aug 2021 14:21:14,545 INFO : 72% Done

26 Aug 2021 14:21:15,623 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 6 of 43

26 Aug 2021 14:21:16,711 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 43

26 Aug 2021 14:21:16,714 INFO : 73% Done

26 Aug 2021 14:21:17,797 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 43

26 Aug 2021 14:21:17,799 INFO : 74% Done

26 Aug 2021 14:21:18,840 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 9 of 43

26 Aug 2021 14:21:19,895 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 10 of 43

26 Aug 2021 14:21:19,899 INFO : 75% Done

26 Aug 2021 14:21:20,948 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 11 of 43

26 Aug 2021 14:21:20,950 INFO : 76% Done

26 Aug 2021 14:21:21,996 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 12 of 43

26 Aug 2021 14:21:23,013 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 43

26 Aug 2021 14:21:23,015 INFO : 77% Done

26 Aug 2021 14:21:24,011 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 43

26 Aug 2021 14:21:24,013 INFO : 78% Done

26 Aug 2021 14:21:25,012 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 43

26 Aug 2021 14:21:25,015 INFO : 79% Done

26 Aug 2021 14:21:26,033 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 43

26 Aug 2021 14:21:27,055 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 17 of 43

26 Aug 2021 14:21:27,057 INFO : 80% Done

26 Aug 2021 14:21:28,055 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_05.raw in QC folder. 18 of 43

26 Aug 2021 14:21:28,058 INFO : 81% Done

26 Aug 2021 14:21:29,077 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 19 of 43

26 Aug 2021 14:21:30,059 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 20 of 43

26 Aug 2021 14:21:30,062 INFO : 82% Done

26 Aug 2021 14:21:31,108 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 21 of 43

26 Aug 2021 14:21:31,111 INFO : 83% Done

26 Aug 2021 14:21:32,124 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 22 of 43

26 Aug 2021 14:21:33,190 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_07.raw in QC folder. 23 of 43

26 Aug 2021 14:21:33,192 INFO : 84% Done

26 Aug 2021 14:21:34,175 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 24 of 43

26 Aug 2021 14:21:34,177 INFO : 85% Done

26 Aug 2021 14:21:35,201 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 25 of 43

26 Aug 2021 14:21:36,193 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 26 of 43

26 Aug 2021 14:21:36,195 INFO : 86% Done

26 Aug 2021 14:21:37,240 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 27 of 43

26 Aug 2021 14:21:37,242 INFO : 87% Done

26 Aug 2021 14:21:38,208 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 28 of 43

26 Aug 2021 14:21:38,210 INFO : 88% Done

26 Aug 2021 14:21:39,227 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_02.raw in QC folder. 29 of 43

26 Aug 2021 14:21:40,190 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 30 of 43

26 Aug 2021 14:21:40,192 INFO : 89% Done

26 Aug 2021 14:21:41,215 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 31 of 43

26 Aug 2021 14:21:41,217 INFO : 90% Done

26 Aug 2021 14:21:42,191 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 32 of 43

26 Aug 2021 14:21:43,198 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 33 of 43

26 Aug 2021 14:21:43,200 INFO : 91% Done

26 Aug 2021 14:21:44,180 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 34 of 43

26 Aug 2021 14:21:44,181 INFO : 92% Done

26 Aug 2021 14:21:45,185 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 35 of 43

26 Aug 2021 14:21:46,154 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 36 of 43

26 Aug 2021 14:21:46,156 INFO : 93% Done

26 Aug 2021 14:21:47,133 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 37 of 43

26 Aug 2021 14:21:47,134 INFO : 94% Done

26 Aug 2021 14:21:48,108 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_06.raw in QC folder. 38 of 43

26 Aug 2021 14:21:49,114 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_03.raw in QC folder. 39 of 43

26 Aug 2021 14:21:49,116 INFO : 95% Done

26 Aug 2021 14:21:50,137 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 40 of 43

26 Aug 2021 14:21:50,139 INFO : 96% Done

26 Aug 2021 14:21:51,120 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 41 of 43

26 Aug 2021 14:21:51,122 INFO : 97% Done

26 Aug 2021 14:21:52,124 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 42 of 43

26 Aug 2021 14:21:53,115 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 43 of 43

26 Aug 2021 14:21:53,117 INFO : 98% Done

26 Aug 2021 14:21:53,117 INFO : Done updating previously imported sample file data.

26 Aug 2021 14:21:53,641 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-08-26_11-43-49.sky.zip have been updated with newer data.

26 Aug 2021 14:21:53,642 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-08-26_11-43-49.sky.zip

26 Aug 2021 14:21:53,642 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-08-26_11-43-49

26 Aug 2021 14:21:53,643 INFO : Creating and populating temp tables for Proportion values

26 Aug 2021 14:21:53,666 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Aug 2021 14:21:53,747 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Aug 2021 14:21:53,777 INFO : Cleaning up temp tables

26 Aug 2021 14:21:54,023 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-08-26_17-21-01.sky.zip

26 Aug 2021 14:21:54,025 INFO : 100% Done

26 Aug 2021 14:21:54,057 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'