25 Aug 2021 08:13:04,202 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

25 Aug 2021 08:13:04,207 INFO : Starting to import Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-08-25_11-12-58.sky.zip

25 Aug 2021 08:13:04,208 INFO : Expanding 20210521_Mix_1_and_2_no_IS.blib

25 Aug 2021 08:13:04,211 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.skyd

25 Aug 2021 08:13:04,509 INFO : Expanding 20210630_Auto_QC_800_CON_Mix1.sky

25 Aug 2021 08:13:04,537 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.22

25 Aug 2021 08:13:04,545 INFO : 2% Done

25 Aug 2021 08:13:04,686 DEBUG: Starting to load chromatogram headers

25 Aug 2021 08:13:04,691 DEBUG: Done loading chromatogram headers

25 Aug 2021 08:13:04,840 INFO : Inserting Precursors_Mix_1

25 Aug 2021 08:13:04,849 INFO : 4% Done

25 Aug 2021 08:13:04,888 INFO : 7% Done

25 Aug 2021 08:13:04,924 INFO : 10% Done

25 Aug 2021 08:13:04,957 INFO : 12% Done

25 Aug 2021 08:13:04,990 INFO : 14% Done

25 Aug 2021 08:13:05,023 INFO : 17% Done

25 Aug 2021 08:13:05,057 INFO : 20% Done

25 Aug 2021 08:13:05,090 INFO : 22% Done

25 Aug 2021 08:13:05,123 INFO : 25% Done

25 Aug 2021 08:13:05,157 INFO : 28% Done

25 Aug 2021 08:13:05,196 INFO : 30% Done

25 Aug 2021 08:13:05,229 INFO : 32% Done

25 Aug 2021 08:13:05,260 INFO : 35% Done

25 Aug 2021 08:13:05,295 INFO : 37% Done

25 Aug 2021 08:13:05,327 INFO : 40% Done

25 Aug 2021 08:13:05,355 INFO : 43% Done

25 Aug 2021 08:13:05,383 INFO : 45% Done

25 Aug 2021 08:13:05,411 INFO : 48% Done

25 Aug 2021 08:13:05,440 INFO : 50% Done

25 Aug 2021 08:13:05,468 INFO : 53% Done

25 Aug 2021 08:13:05,497 INFO : 55% Done

25 Aug 2021 08:13:05,526 INFO : 58% Done

25 Aug 2021 08:13:05,558 INFO : 60% Done

25 Aug 2021 08:13:05,583 DEBUG: Total molecules inserted: 23

25 Aug 2021 08:13:05,584 INFO : Done parsing Skyline document.

25 Aug 2021 08:13:05,587 INFO : No group comparisons found.

25 Aug 2021 08:13:05,587 INFO : Calculating calibration curves

25 Aug 2021 08:13:05,588 DEBUG: Calculating calibration curve for Precursors_Mix_1, 1 of 1

25 Aug 2021 08:13:05,827 INFO : 68% Done

25 Aug 2021 08:13:05,832 INFO : Done calculating calibration curves.

25 Aug 2021 08:13:06,948 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_OLD_CON.raw in QC folder. 1 of 38

25 Aug 2021 08:13:06,950 INFO : 69% Done

25 Aug 2021 08:13:07,925 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_04.raw in QC folder. 2 of 38

25 Aug 2021 08:13:07,927 INFO : 70% Done

25 Aug 2021 08:13:08,908 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_05.raw in QC folder. 3 of 38

25 Aug 2021 08:13:09,905 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj8.raw in QC folder. 4 of 38

25 Aug 2021 08:13:09,908 INFO : 71% Done

25 Aug 2021 08:13:10,901 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON_A.raw in QC folder. 5 of 38

25 Aug 2021 08:13:10,903 INFO : 72% Done

25 Aug 2021 08:13:11,902 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_04.raw in QC folder. 6 of 38

25 Aug 2021 08:13:11,904 INFO : 73% Done

25 Aug 2021 08:13:12,882 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_03.raw in QC folder. 7 of 38

25 Aug 2021 08:13:13,862 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj9.raw in QC folder. 8 of 38

25 Aug 2021 08:13:13,865 INFO : 74% Done

25 Aug 2021 08:13:14,882 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj3.raw in QC folder. 9 of 38

25 Aug 2021 08:13:14,884 INFO : 75% Done

25 Aug 2021 08:13:15,876 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_12.raw in QC folder. 10 of 38

25 Aug 2021 08:13:15,880 INFO : 76% Done

25 Aug 2021 08:13:16,866 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_06.raw in QC folder. 11 of 38

25 Aug 2021 08:13:16,869 INFO : 77% Done

25 Aug 2021 08:13:17,875 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON_A.raw in QC folder. 12 of 38

25 Aug 2021 08:13:17,877 INFO : 78% Done

25 Aug 2021 08:13:18,883 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON.raw in QC folder. 13 of 38

25 Aug 2021 08:13:19,917 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210630_800QC_A.raw in QC folder. 14 of 38

25 Aug 2021 08:13:19,920 INFO : 79% Done

25 Aug 2021 08:13:20,935 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210825_800CON_01.raw in QC folder. 15 of 38

25 Aug 2021 08:13:20,937 INFO : 80% Done

25 Aug 2021 08:13:21,930 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_02.raw in QC folder. 16 of 38

25 Aug 2021 08:13:21,932 INFO : 81% Done

25 Aug 2021 08:13:22,937 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_03.raw in QC folder. 17 of 38

25 Aug 2021 08:13:22,939 INFO : 82% Done

25 Aug 2021 08:13:23,946 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_07.raw in QC folder. 18 of 38

25 Aug 2021 08:13:24,962 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210330_800CON.raw in QC folder. 19 of 38

25 Aug 2021 08:13:24,964 INFO : 83% Done

25 Aug 2021 08:13:25,962 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj4.raw in QC folder. 20 of 38

25 Aug 2021 08:13:25,963 INFO : 84% Done

25 Aug 2021 08:13:26,976 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210608-SRP_DB_Batch_11-12_MF_CON.raw in QC folder. 21 of 38

25 Aug 2021 08:13:26,978 INFO : 85% Done

25 Aug 2021 08:13:27,985 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON.raw in QC folder. 22 of 38

25 Aug 2021 08:13:28,962 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj1.raw in QC folder. 23 of 38

25 Aug 2021 08:13:28,964 INFO : 86% Done

25 Aug 2021 08:13:29,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_11.raw in QC folder. 24 of 38

25 Aug 2021 08:13:30,001 INFO : 87% Done

25 Aug 2021 08:13:31,004 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210629_Curve_800CON_01.raw in QC folder. 25 of 38

25 Aug 2021 08:13:31,006 INFO : 88% Done

25 Aug 2021 08:13:31,979 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210611-Water_Samples_800CON_20210614161228.raw in QC folder. 26 of 38

25 Aug 2021 08:13:32,954 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_02.raw in QC folder. 27 of 38

25 Aug 2021 08:13:32,956 INFO : 89% Done

25 Aug 2021 08:13:33,995 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_08.raw in QC folder. 28 of 38

25 Aug 2021 08:13:33,997 INFO : 90% Done

25 Aug 2021 08:13:34,996 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_10.raw in QC folder. 29 of 38

25 Aug 2021 08:13:34,998 INFO : 91% Done

25 Aug 2021 08:13:36,017 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210323_800CON.raw in QC folder. 30 of 38

25 Aug 2021 08:13:36,020 INFO : 92% Done

25 Aug 2021 08:13:36,999 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_800CON.raw in QC folder. 31 of 38

25 Aug 2021 08:13:37,001 INFO : 93% Done

25 Aug 2021 08:13:38,020 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj5.raw in QC folder. 32 of 38

25 Aug 2021 08:13:39,012 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj2.raw in QC folder. 33 of 38

25 Aug 2021 08:13:39,014 INFO : 94% Done

25 Aug 2021 08:13:40,021 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj7.raw in QC folder. 34 of 38

25 Aug 2021 08:13:40,023 INFO : 95% Done

25 Aug 2021 08:13:40,996 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_04.raw in QC folder. 35 of 38

25 Aug 2021 08:13:40,998 INFO : 96% Done

25 Aug 2021 08:13:41,982 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_01.raw in QC folder. 36 of 38

25 Aug 2021 08:13:41,984 INFO : 97% Done

25 Aug 2021 08:13:42,946 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210210_large_800CON_inj6.raw in QC folder. 37 of 38

25 Aug 2021 08:13:43,930 DEBUG: Updating previously imported data for sample file D:\AutoQC\raw files\20210506_CON_09.raw in QC folder. 38 of 38

25 Aug 2021 08:13:43,931 INFO : 98% Done

25 Aug 2021 08:13:43,931 INFO : Done updating previously imported sample file data.

25 Aug 2021 08:13:44,427 INFO : All the related sampleFiles for /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-08-25_11-12-00.sky.zip have been updated with newer data.

25 Aug 2021 08:13:44,427 INFO : Deleting /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-08-25_11-12-00.sky.zip

25 Aug 2021 08:13:44,427 INFO : Deleting directory /data/labkey/files/NCSU - METRIC/METRIC Internal/JRE OE240 PFAS/@files/20210630_Auto_QC_800_CON_Mix1_2021-08-25_11-12-00

25 Aug 2021 08:13:44,427 INFO : Creating and populating temp tables for Proportion values

25 Aug 2021 08:13:44,448 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

25 Aug 2021 08:13:44,518 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

25 Aug 2021 08:13:44,544 INFO : Cleaning up temp tables

25 Aug 2021 08:13:44,768 INFO : Completed import of Skyline document from 20210630_Auto_QC_800_CON_Mix1_2021-08-25_11-12-58.sky.zip

25 Aug 2021 08:13:44,771 INFO : 100% Done

25 Aug 2021 08:13:44,796 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'