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Validating data for experiment Id: 2077, validation Id: 1630

Stellar highly multiplex fluid assays

Job Status

Created: 2025-06-17 14:30:02
Modified: 2025-06-17 14:30:05
Email: plubell@uw.edu
Status: COMPLETE
Info:
Description: Validating data for experiment Id: 2077, validation Id: 1630
File Path: /data/labkey/files/MacCoss/Deanna/Stellar highly multiplex fluid assays/@files/Experiment_Validation_2168_2025-06-17_14-30-02.log
Files: Experiment_Validation_2168_2025-06-17_14-30-02.log
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Log File


17 Jun 2025 14:30:02,853 INFO : Validating data for a ProteomeXchange submission.
17 Jun 2025 14:30:02,854 INFO : =======================================
17 Jun 2025 14:30:02,883 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
17 Jun 2025 14:30:02,883 INFO : Validating data for experiment Id: 2077, validation Id: 1630
17 Jun 2025 14:30:02,922 INFO : Validating data for 9 Skyline documents in 1 folders
17 Jun 2025 14:30:03,078 INFO : Sample file validation for Skyline document: LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick_2024-06-02_15-26-11.sky.zip
17 Jun 2025 14:30:03,078 INFO :   Found all sample files.
17 Jun 2025 14:30:03,186 INFO : Sample file validation for Skyline document: OT_GPF_PRM_survey_MMCC_boundaries_opttrans_nochick_2024-06-03_14-36-08.sky.zip
17 Jun 2025 14:30:03,186 INFO :   Found all sample files.
17 Jun 2025 14:30:03,218 INFO : Sample file validation for Skyline document: Exp_CSF_MMCC_quant_all_adjBound_opttrans_nochick_2024-06-03_14-53-02.sky.zip
17 Jun 2025 14:30:03,218 INFO :   Found all sample files.
17 Jun 2025 14:30:03,244 INFO : Sample file validation for Skyline document: CSF_neurod105_assay_individuals_manual_2024-06-03_15-26-36.sky.zip
17 Jun 2025 14:30:03,244 INFO :   Found all sample files.
17 Jun 2025 14:30:03,334 INFO : Sample file validation for Skyline document: 230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip
17 Jun 2025 14:30:03,334 INFO :   Found all sample files.
17 Jun 2025 14:30:03,469 INFO : Sample file validation for Skyline document: 230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
17 Jun 2025 14:30:03,469 INFO :   Found all sample files.
17 Jun 2025 14:30:03,499 INFO : Sample file validation for Skyline document: 240207_gpf_2024-06-04_10-24-18.sky.zip
17 Jun 2025 14:30:03,499 INFO :   Found all sample files.
17 Jun 2025 14:30:03,522 INFO : Sample file validation for Skyline document: 2024-05 CSF LIT GPF-MSFragger-3.sky.zip
17 Jun 2025 14:30:03,522 INFO :   Found all sample files.
17 Jun 2025 14:30:03,529 INFO : Sample file validation for Skyline document: Exp_CSF_GPF_A_2024-05-06_21-16-47.sky.zip
17 Jun 2025 14:30:03,529 INFO :   Found all sample files.
17 Jun 2025 14:30:03,651 INFO : Modifications validation:
17 Jun 2025 14:30:03,651 INFO : VALID MODIFICATIONS:
17 Jun 2025 14:30:03,651 INFO : 11358: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
17 Jun 2025 14:30:03,651 INFO :     CSF_neurod105_assay_individuals_manual_2024-06-03_15-26-36.sky.zip
17 Jun 2025 14:30:03,651 INFO :     240207_gpf_2024-06-04_10-24-18.sky.zip
17 Jun 2025 14:30:03,651 INFO :     OT_GPF_PRM_survey_MMCC_boundaries_opttrans_nochick_2024-06-03_14-36-08.sky.zip
17 Jun 2025 14:30:03,651 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
17 Jun 2025 14:30:03,651 INFO :     2024-05 CSF LIT GPF-MSFragger-3.sky.zip
17 Jun 2025 14:30:03,651 INFO :     Exp_CSF_MMCC_quant_all_adjBound_opttrans_nochick_2024-06-03_14-53-02.sky.zip
17 Jun 2025 14:30:03,651 INFO :     LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick_2024-06-02_15-26-11.sky.zip
17 Jun 2025 14:30:03,651 INFO :     230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip
17 Jun 2025 14:30:03,652 INFO :     Exp_CSF_GPF_A_2024-05-06_21-16-47.sky.zip
17 Jun 2025 14:30:03,652 INFO : 11359: Oxidation (M): UNIMOD:35 - Oxidation
17 Jun 2025 14:30:03,652 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
17 Jun 2025 14:30:03,652 INFO :     230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip
17 Jun 2025 14:30:03,652 INFO : 11360: Label:13C(6)15N(2) (C-term K): 
17 Jun 2025 14:30:03,652 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
17 Jun 2025 14:30:03,652 INFO : 11361: Label:13C(6)15N(4) (C-term R): 
17 Jun 2025 14:30:03,652 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
17 Jun 2025 14:30:03,652 INFO : INVALID MODIFICATIONS (No Unimod ID):
17 Jun 2025 14:30:03,654 INFO : Validating spectral library: 240207_gpf.blib
17 Jun 2025 14:30:03,744 INFO : '240207_gpf' (240207_gpf.blib) library in 1 Skyline documents was built with 8 raw files; 1 peptide Id files. Status: VALID
17 Jun 2025 14:30:03,744 INFO : Validating spectral library: LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick.blib
17 Jun 2025 14:30:03,903 INFO : 'LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick' (LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick.blib) library in 1 Skyline documents was built with 12 raw files; 6 peptide Id files. Status: VALID
17 Jun 2025 14:30:03,904 INFO : Validating spectral library: Exp_CSF_MMCC_compquant.elib
17 Jun 2025 14:30:04,252 INFO : 'Exp_CSF_MMCC_quant' (Exp_CSF_MMCC_compquant.elib) library in 1 Skyline documents was built with 27 raw files; 0 peptide Id files. Status: VALID
17 Jun 2025 14:30:04,253 INFO : Validating spectral library: ES904_Neo_PRTC.blib
17 Jun 2025 14:30:04,269 INFO : 'ES904 Neo PRTC' (ES904_Neo_PRTC.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Prosit / Koina Library
17 Jun 2025 14:30:04,270 INFO :   MISSING FILES:
17 Jun 2025 14:30:04,270 INFO :     Spectrum File: Prositintensity_prosit_publication_v1
17 Jun 2025 14:30:04,270 INFO : Validating spectral library: 230304_ev2pool_survey_reddb.blib
17 Jun 2025 14:30:04,382 INFO : '230305_ev2_prm' (230304_ev2pool_survey_reddb.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID
17 Jun 2025 14:30:04,382 INFO : Validating spectral library: 2024-05 CSF LIT GPF-MSFragger-3.blib
17 Jun 2025 14:30:04,533 INFO : '2024-05 CSF LIT GPF-MSFragger-3' (2024-05 CSF LIT GPF-MSFragger-3.blib) library in 1 Skyline documents was built with 12 raw files; 6 peptide Id files. Status: VALID
17 Jun 2025 14:30:04,534 INFO : Validating spectral library: Exp_CSF_GPF_A.elib
17 Jun 2025 14:30:04,960 INFO : 'Exp_CSF_GPF_A' (Exp_CSF_GPF_A.elib) library in 2 Skyline documents was built with 6 raw files; 0 peptide Id files. Status: VALID
17 Jun 2025 14:30:04,961 INFO : Validating spectral library: 230120_p2_neo_30min_reddb_dia1th_survey.blib
17 Jun 2025 14:30:05,006 INFO : '230120_p2_neo_30min_reddb_dia1th_survey (230124_p2_neo_30min_redb_50human50chicken_check)' (230120_p2_neo_30min_reddb_dia1th_survey.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID
17 Jun 2025 14:30:05,007 INFO : Validating spectral library: CSF_neurod105_assay_individuals_manual.blib
17 Jun 2025 14:30:05,098 INFO : 'CSF_neurod105_assay_individuals_manual' (CSF_neurod105_assay_individuals_manual.blib) library in 1 Skyline documents was built with 8 raw files; 1 peptide Id files. Status: VALID
17 Jun 2025 14:30:05,098 INFO : Spectral library validation complete.
17 Jun 2025 14:30:05,098 INFO : Data validation is complete. Status is Complete
17 Jun 2025 14:30:05,098 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'