LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.sky.zip: /LINCS/Publications/Touchstone_2/P100_GctMaker

LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.sky.zip

P100_GctMaker

Document Summary

LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.sky.zip 1 version

90 proteins, 96 peptides, 192 precursors, 1,054 transitions - 95 replicates, 96 calibration curves - Skyline-daily (64-bit) 4.1.1.18118

Precursor List

Protein Note/Annotations

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
ALGSPTKQLLPCEMACNEK	pr_gene_id: 54187 pr_gene_symbol: NANS pr_id: 7849_NANS_S275_ALGS[+80]PTKQLLPC[+57]EMAC[+57]NEK pr_p100_base_peptide: ALGSPTKQLLPCEMACNEK pr_p100_cluster: CL01 pr_p100_gene_cluster_code: NANS_CL01 pr_p100_modified_peptide_code: ALGS[+80]PTKQLLPC[+57]EMAC[+57]NEK pr_p100_original_probe_id: 7849_NANS_S275 pr_p100_phosphosite: S275 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q9NR45	1	2225.9884		ALGSPTKQLLPCEMACNEK		light	3+	743.0034	2225.9884	4	25.0000
ALGSPTKQLLPCEMACNEK	pr_gene_id: 54187 pr_gene_symbol: NANS pr_id: 7849_NANS_S275_ALGS[+80]PTKQLLPC[+57]EMAC[+57]NEK pr_p100_base_peptide: ALGSPTKQLLPCEMACNEK pr_p100_cluster: CL01 pr_p100_gene_cluster_code: NANS_CL01 pr_p100_modified_peptide_code: ALGS[+80]PTKQLLPC[+57]EMAC[+57]NEK pr_p100_original_probe_id: 7849_NANS_S275 pr_p100_phosphosite: S275 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q9NR45	1	2225.9884		ALGSPTKQLLPCEMACNEK		heavy	3+	748.3462	2242.0168	4	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
VSMPDVELNLKSPK	pr_gene_id: 79026 pr_gene_symbol: AHNAK pr_id: 5003_AHNAK_S3426_VSMPDVELNLKS[+80]PK pr_p100_base_peptide: VSMPDVELNLKSPK pr_p100_cluster: CL01 pr_p100_gene_cluster_code: AHNAK_CL01 pr_p100_modified_peptide_code: VSMPDVELNLKS[+80]PK pr_p100_original_probe_id: 5003_AHNAK_S3426 pr_p100_phosphosite: S3426 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q09666	1	1635.7943		VSMPDVELNLKSPK		light	2+	818.9044	1635.7943	4	25.0000
VSMPDVELNLKSPK	pr_gene_id: 79026 pr_gene_symbol: AHNAK pr_id: 5003_AHNAK_S3426_VSMPDVELNLKS[+80]PK pr_p100_base_peptide: VSMPDVELNLKSPK pr_p100_cluster: CL01 pr_p100_gene_cluster_code: AHNAK_CL01 pr_p100_modified_peptide_code: VSMPDVELNLKS[+80]PK pr_p100_original_probe_id: 5003_AHNAK_S3426 pr_p100_phosphosite: S3426 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q09666	1	1635.7943		VSMPDVELNLKSPK		heavy	2+	826.9186	1651.8227	4	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
LGPGRPLPTFPTSECTSDVEPDTR	pr_gene_id: 79039 pr_gene_symbol: DDX54 pr_id: 6696_DDX54_S75_LGPGRPLPTFPTSEC[+57]TS[+80]DVEPDTR pr_p100_base_peptide: LGPGRPLPTFPTSECTSDVEPDTR pr_p100_cluster: CL02 pr_p100_gene_cluster_code: DDX54_CL02 pr_p100_modified_peptide_code: LGPGRPLPTFPTSEC[+57]TS[+80]DVEPDTR pr_p100_original_probe_id: 6696_DDX54_S75 pr_p100_phosphosite: S75 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q8TDD1	0	2708.2153		LGPGRPLPTFPTSECTSDVEPDTR		light	3+	903.7457	2708.2153	4	25.0000
LGPGRPLPTFPTSECTSDVEPDTR	pr_gene_id: 79039 pr_gene_symbol: DDX54 pr_id: 6696_DDX54_S75_LGPGRPLPTFPTSEC[+57]TS[+80]DVEPDTR pr_p100_base_peptide: LGPGRPLPTFPTSECTSDVEPDTR pr_p100_cluster: CL02 pr_p100_gene_cluster_code: DDX54_CL02 pr_p100_modified_peptide_code: LGPGRPLPTFPTSEC[+57]TS[+80]DVEPDTR pr_p100_original_probe_id: 6696_DDX54_S75 pr_p100_phosphosite: S75 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q8TDD1	0	2708.2153		LGPGRPLPTFPTSECTSDVEPDTR		heavy	3+	907.0818	2718.2236	4	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
LPLVPESPRR	pr_gene_id: 51530 pr_gene_symbol: ZC3HC1 pr_id: 1130_HSPC216_S321_LPLVPES[+80]PRR pr_p100_base_peptide: LPLVPESPRR pr_p100_cluster: CL02 pr_p100_gene_cluster_code: HSPC216_CL02 pr_p100_modified_peptide_code: LPLVPES[+80]PRR pr_p100_original_probe_id: 1130_HSPC216_S321 pr_p100_phosphosite: S321 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q86WB0	1	1242.6486		LPLVPESPRR		light	2+	622.3316	1242.6486	5	25.0000
LPLVPESPRR	pr_gene_id: 51530 pr_gene_symbol: ZC3HC1 pr_id: 1130_HSPC216_S321_LPLVPES[+80]PRR pr_p100_base_peptide: LPLVPESPRR pr_p100_cluster: CL02 pr_p100_gene_cluster_code: HSPC216_CL02 pr_p100_modified_peptide_code: LPLVPES[+80]PRR pr_p100_original_probe_id: 1130_HSPC216_S321 pr_p100_phosphosite: S321 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q86WB0	1	1242.6486		LPLVPESPRR		heavy	2+	632.3398	1262.6651	5	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
SFAGNLNTYKR	pr_gene_id: 5214 pr_gene_symbol: PFKP pr_id: 3145_PFKF_S386_S[+80]FAGNLNTYKR pr_p100_base_peptide: SFAGNLNTYKR pr_p100_cluster: CL03 pr_p100_gene_cluster_code: PFKF_CL03 pr_p100_modified_peptide_code: S[+80]FAGNLNTYKR pr_p100_original_probe_id: 3145_PFKF_S386 pr_p100_phosphosite: S386 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q01813	1	1349.6129		SFAGNLNTYKR		light	2+	675.8137	1349.6129	4	25.0000
SFAGNLNTYKR	pr_gene_id: 5214 pr_gene_symbol: PFKP pr_id: 3145_PFKF_S386_S[+80]FAGNLNTYKR pr_p100_base_peptide: SFAGNLNTYKR pr_p100_cluster: CL03 pr_p100_gene_cluster_code: PFKF_CL03 pr_p100_modified_peptide_code: S[+80]FAGNLNTYKR pr_p100_original_probe_id: 3145_PFKF_S386 pr_p100_phosphosite: S386 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q01813	1	1349.6129		SFAGNLNTYKR		heavy	2+	684.8250	1367.6354	4	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
SDKPDMAEIEKFDK	Note: based on ppm, visually inspect all peaks pr_gene_id: 7114 pr_gene_symbol: TMSB4X pr_id: 290_TMSL3_S2_S[+122]DKPDMAEIEKFDK pr_p100_base_peptide: SDKPDMAEIEKFDK pr_p100_cluster: CL03 pr_p100_gene_cluster_code: TMSL3_CL03 pr_p100_modified_peptide_code: S[+122]DKPDMAEIEKFDK pr_p100_original_probe_id: 290_TMSL3_S2 pr_p100_phosphosite: S2 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: P62328	1	1773.7532		SDKPDMAEIEKFDK		light	3+	592.2584	1773.7532	3	25.0000
SDKPDMAEIEKFDK	Note: based on ppm, visually inspect all peaks pr_gene_id: 7114 pr_gene_symbol: TMSB4X pr_id: 290_TMSL3_S2_S[+122]DKPDMAEIEKFDK pr_p100_base_peptide: SDKPDMAEIEKFDK pr_p100_cluster: CL03 pr_p100_gene_cluster_code: TMSL3_CL03 pr_p100_modified_peptide_code: S[+122]DKPDMAEIEKFDK pr_p100_original_probe_id: 290_TMSL3_S2 pr_p100_phosphosite: S2 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: P62328	1	1773.7532		SDKPDMAEIEKFDK		heavy	3+	597.6012	1789.7816	3	25.0000
SDKPDMAEIEKFDK	pr_gene_id: 7114 pr_gene_symbol: TMSB4X pr_id: 290_TMSL3_S2_S[+122]DKPDM[+16]AEIEKFDK pr_p100_base_peptide: SDKPDMAEIEKFDK pr_p100_cluster: CL03 pr_p100_gene_cluster_code: TMSL3_CL03 pr_p100_modified_peptide_code: S[+122]DKPDM[+16]AEIEKFDK pr_p100_original_probe_id: 290_TMSL3_S2 pr_p100_phosphosite: S2 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: P62328	1	1789.7481		SDKPDMAEIEKFDK		light	3+	597.5900	1789.7481	6	25.0000
SDKPDMAEIEKFDK	pr_gene_id: 7114 pr_gene_symbol: TMSB4X pr_id: 290_TMSL3_S2_S[+122]DKPDM[+16]AEIEKFDK pr_p100_base_peptide: SDKPDMAEIEKFDK pr_p100_cluster: CL03 pr_p100_gene_cluster_code: TMSL3_CL03 pr_p100_modified_peptide_code: S[+122]DKPDM[+16]AEIEKFDK pr_p100_original_probe_id: 290_TMSL3_S2 pr_p100_phosphosite: S2 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: P62328	1	1789.7481		SDKPDMAEIEKFDK		heavy	3+	602.9328	1805.7765	6	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
QDDSPPRPIIGPALPPGFIK	pr_gene_id: 55425 pr_gene_symbol: KIAA1704 pr_id: 6423_AD029_S105_QDDS[+80]PPRPIIGPALPPGFIK pr_p100_base_peptide: QDDSPPRPIIGPALPPGFIK pr_p100_cluster: CL04 pr_p100_gene_cluster_code: AD029_CL04 pr_p100_modified_peptide_code: QDDS[+80]PPRPIIGPALPPGFIK pr_p100_original_probe_id: 6423_AD029_S105 pr_p100_phosphosite: S105 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q8IXQ4	0	2194.1188		QDDSPPRPIIGPALPPGFIK		light	3+	732.3802	2194.1188	6	25.0000
QDDSPPRPIIGPALPPGFIK	pr_gene_id: 55425 pr_gene_symbol: KIAA1704 pr_id: 6423_AD029_S105_QDDS[+80]PPRPIIGPALPPGFIK pr_p100_base_peptide: QDDSPPRPIIGPALPPGFIK pr_p100_cluster: CL04 pr_p100_gene_cluster_code: AD029_CL04 pr_p100_modified_peptide_code: QDDS[+80]PPRPIIGPALPPGFIK pr_p100_original_probe_id: 6423_AD029_S105 pr_p100_phosphosite: S105 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q8IXQ4	0	2194.1188		QDDSPPRPIIGPALPPGFIK		heavy	3+	735.0516	2202.1330	6	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
VYTHEVVTLWYR	pr_gene_id: 983 pr_gene_symbol: CDC2 pr_id: 9285_CDC2_T161_VYT[+80]HEVVTLWYR pr_p100_base_peptide: VYTHEVVTLWYR pr_p100_cluster: CL04 pr_p100_gene_cluster_code: CDC2_CL04 pr_p100_modified_peptide_code: VYT[+80]HEVVTLWYR pr_p100_original_probe_id: 9285_CDC2_T161 pr_p100_phosphosite: T161 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: P06493	0	1644.7701		VYTHEVVTLWYR		light	3+	549.2640	1644.7701	4	25.0000
VYTHEVVTLWYR	pr_gene_id: 983 pr_gene_symbol: CDC2 pr_id: 9285_CDC2_T161_VYT[+80]HEVVTLWYR pr_p100_base_peptide: VYTHEVVTLWYR pr_p100_cluster: CL04 pr_p100_gene_cluster_code: CDC2_CL04 pr_p100_modified_peptide_code: VYT[+80]HEVVTLWYR pr_p100_original_probe_id: 9285_CDC2_T161 pr_p100_phosphosite: T161 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: P06493	0	1644.7701		VYTHEVVTLWYR		heavy	3+	552.6001	1654.7784	4	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
KPNIFYSGPASPARPR	pr_gene_id: 29028 pr_gene_symbol: ATAD2 pr_id: 6108_ATAD2_S327_KPNIFYSGPAS[+80]PARPR pr_p100_base_peptide: KPNIFYSGPASPARPR pr_p100_cluster: CL05 pr_p100_gene_cluster_code: ATAD2_CL05 pr_p100_modified_peptide_code: KPNIFYSGPAS[+80]PARPR pr_p100_original_probe_id: 6108_ATAD2_S327 pr_p100_phosphosite: S327 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q6PL18	0	1836.9036		KPNIFYSGPASPARPR		light	3+	613.3085	1836.9036	7	25.0000
KPNIFYSGPASPARPR	pr_gene_id: 29028 pr_gene_symbol: ATAD2 pr_id: 6108_ATAD2_S327_KPNIFYSGPAS[+80]PARPR pr_p100_base_peptide: KPNIFYSGPASPARPR pr_p100_cluster: CL05 pr_p100_gene_cluster_code: ATAD2_CL05 pr_p100_modified_peptide_code: KPNIFYSGPAS[+80]PARPR pr_p100_original_probe_id: 6108_ATAD2_S327 pr_p100_phosphosite: S327 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q6PL18	0	1836.9036		KPNIFYSGPASPARPR		heavy	3+	616.6446	1846.9119	7	25.0000

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Peptide Note/Annotations	Missed Cleavages Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Peptide Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Rank Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Precursor Note/Annotations	Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Q1 Z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Q1 m/z Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Precursor Neutral Mass Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Transition Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	CE Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	DP Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart
AFGSGIDIKPGTPPIAGR	pr_gene_id: 23215 pr_gene_symbol: BAT2D1 pr_id: 8879_BAT2D1_T2675_AFGSGIDIKPGT[+80]PPIAGR pr_p100_base_peptide: AFGSGIDIKPGTPPIAGR pr_p100_cluster: CL05 pr_p100_gene_cluster_code: BAT2D1_CL05 pr_p100_modified_peptide_code: AFGSGIDIKPGT[+80]PPIAGR pr_p100_original_probe_id: 8879_BAT2D1_T2675 pr_p100_phosphosite: T2675 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q9Y520	0	1832.9186		AFGSGIDIKPGTPPIAGR		light	3+	611.9801	1832.9186	3	25.0000
AFGSGIDIKPGTPPIAGR	pr_gene_id: 23215 pr_gene_symbol: BAT2D1 pr_id: 8879_BAT2D1_T2675_AFGSGIDIKPGT[+80]PPIAGR pr_p100_base_peptide: AFGSGIDIKPGTPPIAGR pr_p100_cluster: CL05 pr_p100_gene_cluster_code: BAT2D1_CL05 pr_p100_modified_peptide_code: AFGSGIDIKPGT[+80]PPIAGR pr_p100_original_probe_id: 8879_BAT2D1_T2675 pr_p100_phosphosite: T2675 pr_probe_normalization_group: 1 pr_probe_suitability_manual: TRUE pr_uniprot_id: Q9Y520	0	1832.9186		AFGSGIDIKPGTPPIAGR		heavy	3+	615.3162	1842.9269	3	25.0000