23 Dec 2020 20:45:42,234 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

23 Dec 2020 20:45:42,255 INFO : Starting to import Skyline document from LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.sky.zip

23 Dec 2020 20:45:42,264 INFO : Expanding LINCSP100_final_90.blib

23 Dec 2020 20:45:42,303 INFO : Expanding LINCSP100_final_90.redundant.blib

23 Dec 2020 20:45:42,312 INFO : Expanding LINCS_P100_PRM_Plate28_annotated_minimized.skyd

23 Dec 2020 20:45:45,331 INFO : Expanding LINCS_P100_PRM_Plate28_annotated_minimized.sky

23 Dec 2020 20:45:45,591 INFO : 1% Done

23 Dec 2020 20:45:46,958 DEBUG: Starting to load chromatogram headers

23 Dec 2020 20:45:46,978 DEBUG: Done loading chromatogram headers

23 Dec 2020 20:45:47,984 INFO : Inserting NANS_CL01

23 Dec 2020 20:45:47,994 INFO : 2% Done

23 Dec 2020 20:45:48,598 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:48,599 INFO : Inserting AHNAK_CL01

23 Dec 2020 20:45:48,608 INFO : 3% Done

23 Dec 2020 20:45:49,026 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:49,027 INFO : Inserting DDX54_CL02

23 Dec 2020 20:45:49,038 INFO : 4% Done

23 Dec 2020 20:45:49,720 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:49,721 INFO : Inserting HSPC216_CL02

23 Dec 2020 20:45:49,731 INFO : 6% Done

23 Dec 2020 20:45:50,474 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:50,475 INFO : Inserting PFKF_CL03

23 Dec 2020 20:45:50,484 INFO : 7% Done

23 Dec 2020 20:45:50,954 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:50,955 INFO : Inserting TMSL3_CL03

23 Dec 2020 20:45:51,364 INFO : 9% Done

23 Dec 2020 20:45:52,101 DEBUG: Total peptides inserted: 2

23 Dec 2020 20:45:52,102 INFO : Inserting AD029_CL04

23 Dec 2020 20:45:52,112 INFO : 10% Done

23 Dec 2020 20:45:52,680 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:52,680 INFO : Inserting CDC2_CL04

23 Dec 2020 20:45:52,689 INFO : 11% Done

23 Dec 2020 20:45:53,224 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:53,225 INFO : Inserting ATAD2_CL05

23 Dec 2020 20:45:53,634 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:53,634 INFO : Inserting BAT2D1_CL05

23 Dec 2020 20:45:53,644 INFO : 12% Done

23 Dec 2020 20:45:54,144 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:54,144 INFO : Inserting AGS1_CL06

23 Dec 2020 20:45:54,154 INFO : 13% Done

23 Dec 2020 20:45:54,575 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:54,576 INFO : Inserting A2D_CL07

23 Dec 2020 20:45:54,585 INFO : 14% Done

23 Dec 2020 20:45:55,175 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:55,177 INFO : Inserting ZNF672_CL07

23 Dec 2020 20:45:55,185 INFO : 15% Done

23 Dec 2020 20:45:55,462 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:55,463 INFO : Inserting ABI1_CL08

23 Dec 2020 20:45:55,472 INFO : 16% Done

23 Dec 2020 20:45:55,875 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:55,876 INFO : Inserting FOSL2_CL08

23 Dec 2020 20:45:56,636 INFO : 18% Done

23 Dec 2020 20:45:57,768 DEBUG: Total peptides inserted: 2

23 Dec 2020 20:45:57,769 INFO : Inserting C17orf85_CL09

23 Dec 2020 20:45:57,787 INFO : 19% Done

23 Dec 2020 20:45:59,401 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:45:59,403 INFO : Inserting EPLIN_CL09

23 Dec 2020 20:45:59,418 INFO : 20% Done

23 Dec 2020 20:46:00,555 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:00,557 INFO : Inserting BAF155_CL10

23 Dec 2020 20:46:00,571 INFO : 21% Done

23 Dec 2020 20:46:01,443 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:01,444 INFO : Inserting FUBP2_CL10

23 Dec 2020 20:46:02,254 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:02,255 INFO : Inserting MAP3K2_CL11

23 Dec 2020 20:46:02,269 INFO : 22% Done

23 Dec 2020 20:46:03,235 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:03,236 INFO : Inserting FAS_CL12

23 Dec 2020 20:46:03,255 INFO : 24% Done

23 Dec 2020 20:46:05,062 INFO : 25% Done

23 Dec 2020 20:46:06,758 DEBUG: Total peptides inserted: 2

23 Dec 2020 20:46:06,759 INFO : Inserting ARM2_CL13

23 Dec 2020 20:46:07,977 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:07,978 INFO : Inserting C9orf88_CL14

23 Dec 2020 20:46:08,005 INFO : 26% Done

23 Dec 2020 20:46:10,797 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:10,799 INFO : Inserting ISPK1_CL14

23 Dec 2020 20:46:10,816 INFO : 28% Done

23 Dec 2020 20:46:12,397 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:12,398 INFO : Inserting RBM14_CL15

23 Dec 2020 20:46:12,412 INFO : 29% Done

23 Dec 2020 20:46:13,635 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:13,636 INFO : Inserting KIAA0701_CL15

23 Dec 2020 20:46:13,653 INFO : 30% Done

23 Dec 2020 20:46:15,196 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:15,198 INFO : Inserting RBM17_CL16

23 Dec 2020 20:46:15,216 INFO : 31% Done

23 Dec 2020 20:46:16,874 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:16,875 INFO : Inserting SLC38A1_CL16

23 Dec 2020 20:46:16,891 INFO : 32% Done

23 Dec 2020 20:46:18,576 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:18,578 INFO : Inserting NOC2L_CL17

23 Dec 2020 20:46:18,592 INFO : 33% Done

23 Dec 2020 20:46:19,515 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:19,516 INFO : Inserting RPL12_CL17

23 Dec 2020 20:46:19,533 INFO : 34% Done

23 Dec 2020 20:46:20,920 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:20,921 INFO : Inserting DDX48_CL18

23 Dec 2020 20:46:20,936 INFO : 35% Done

23 Dec 2020 20:46:22,285 INFO : 36% Done

23 Dec 2020 20:46:23,721 DEBUG: Total peptides inserted: 2

23 Dec 2020 20:46:23,722 INFO : Inserting HCA90_CL18

23 Dec 2020 20:46:23,742 INFO : 37% Done

23 Dec 2020 20:46:25,717 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:25,719 INFO : Inserting CAT53_CL19

23 Dec 2020 20:46:25,736 INFO : 38% Done

23 Dec 2020 20:46:26,982 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:26,983 INFO : Inserting EPLIN_CL19

23 Dec 2020 20:46:27,000 INFO : 40% Done

23 Dec 2020 20:46:28,748 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:28,750 INFO : Inserting HBXAP_CL21

23 Dec 2020 20:46:28,768 INFO : 41% Done

23 Dec 2020 20:46:30,427 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:30,428 INFO : Inserting DCAF1_CL22

23 Dec 2020 20:46:30,470 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:30,471 INFO : Inserting CDW2_CL22

23 Dec 2020 20:46:30,486 INFO : 42% Done

23 Dec 2020 20:46:31,566 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:31,567 INFO : Inserting ANLN_CL23

23 Dec 2020 20:46:31,581 INFO : 43% Done

23 Dec 2020 20:46:32,579 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:32,580 INFO : Inserting OCIA_CL23

23 Dec 2020 20:46:32,594 INFO : 44% Done

23 Dec 2020 20:46:33,398 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:33,399 INFO : Inserting FAM76B_CL24

23 Dec 2020 20:46:33,417 INFO : 45% Done

23 Dec 2020 20:46:35,025 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:35,026 INFO : Inserting HAT1_CL25

23 Dec 2020 20:46:35,042 INFO : 46% Done

23 Dec 2020 20:46:36,084 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:36,086 INFO : Inserting BRAF_CL26

23 Dec 2020 20:46:36,100 INFO : 47% Done

23 Dec 2020 20:46:37,020 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:37,021 INFO : Inserting DYRK_CL27

23 Dec 2020 20:46:37,040 INFO : 48% Done

23 Dec 2020 20:46:38,370 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:38,371 INFO : Inserting LRWD1_CL27

23 Dec 2020 20:46:38,386 INFO : 49% Done

23 Dec 2020 20:46:39,355 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:39,356 INFO : Inserting ALS2_CL28

23 Dec 2020 20:46:39,373 INFO : 50% Done

23 Dec 2020 20:46:40,645 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:40,646 INFO : Inserting BRD4_CL29

23 Dec 2020 20:46:40,664 INFO : 51% Done

23 Dec 2020 20:46:42,114 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:42,115 INFO : Inserting ZC3H14_CL29

23 Dec 2020 20:46:42,133 INFO : 52% Done

23 Dec 2020 20:46:43,668 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:43,669 INFO : Inserting KIF4_CL30

23 Dec 2020 20:46:43,686 INFO : 53% Done

23 Dec 2020 20:46:45,306 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:45,307 INFO : Inserting MAP3K7_CL30

23 Dec 2020 20:46:45,323 INFO : 54% Done

23 Dec 2020 20:46:46,472 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:46,473 INFO : Inserting KIAA0722_CL31

23 Dec 2020 20:46:46,489 INFO : 55% Done

23 Dec 2020 20:46:47,448 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:47,450 INFO : Inserting PAK2_CL31

23 Dec 2020 20:46:47,468 INFO : 56% Done

23 Dec 2020 20:46:49,071 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:49,072 INFO : Inserting LAP2_CL32

23 Dec 2020 20:46:49,091 INFO : 58% Done

23 Dec 2020 20:46:50,802 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:50,804 INFO : Inserting BAT2_CL33

23 Dec 2020 20:46:50,820 INFO : 59% Done

23 Dec 2020 20:46:52,136 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:52,137 INFO : Inserting My038_CL33

23 Dec 2020 20:46:52,153 INFO : 60% Done

23 Dec 2020 20:46:53,302 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:53,303 INFO : Inserting EMK1_CL34

23 Dec 2020 20:46:54,120 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:54,122 INFO : Inserting WDR20_CL34

23 Dec 2020 20:46:54,141 INFO : 62% Done

23 Dec 2020 20:46:56,057 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:56,058 INFO : Inserting THRAP3_CL35

23 Dec 2020 20:46:56,072 INFO : 63% Done

23 Dec 2020 20:46:57,128 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:57,130 INFO : Inserting CAIN_CL35

23 Dec 2020 20:46:57,148 INFO : 64% Done

23 Dec 2020 20:46:58,280 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:58,281 INFO : Inserting GPATC8_CL37

23 Dec 2020 20:46:58,290 INFO : 65% Done

23 Dec 2020 20:46:58,802 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:58,803 INFO : Inserting RP11-373M8.1-002_CL37

23 Dec 2020 20:46:58,820 INFO : 66% Done

23 Dec 2020 20:46:59,680 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:46:59,681 INFO : Inserting KIAA1734_CL38

23 Dec 2020 20:47:00,834 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:00,836 INFO : Inserting MAP4_CL38

23 Dec 2020 20:47:00,853 INFO : 68% Done

23 Dec 2020 20:47:02,404 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:02,405 INFO : Inserting KIAA0217_CL39

23 Dec 2020 20:47:02,420 INFO : 69% Done

23 Dec 2020 20:47:03,691 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:03,692 INFO : Inserting CTG26_CL40

23 Dec 2020 20:47:03,709 INFO : 70% Done

23 Dec 2020 20:47:05,184 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:05,185 INFO : Inserting KIAA1991_CL40

23 Dec 2020 20:47:05,204 INFO : 71% Done

23 Dec 2020 20:47:07,002 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:07,003 INFO : Inserting DBP2_CL41

23 Dec 2020 20:47:07,019 INFO : 72% Done

23 Dec 2020 20:47:08,015 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:08,016 INFO : Inserting ARS2_CL42

23 Dec 2020 20:47:08,035 INFO : 73% Done

23 Dec 2020 20:47:09,199 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:09,200 INFO : Inserting KIAA1321_CL42

23 Dec 2020 20:47:09,209 INFO : 74% Done

23 Dec 2020 20:47:10,689 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:10,690 INFO : Inserting MAPKAPK1A_CL43

23 Dec 2020 20:47:10,709 INFO : 75% Done

23 Dec 2020 20:47:12,304 INFO : 76% Done

23 Dec 2020 20:47:13,613 DEBUG: Total peptides inserted: 2

23 Dec 2020 20:47:13,614 INFO : Inserting C22orf9_CL43

23 Dec 2020 20:47:13,631 INFO : 77% Done

23 Dec 2020 20:47:15,201 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:15,202 INFO : Inserting KIAA1844_CL44

23 Dec 2020 20:47:15,215 INFO : 78% Done

23 Dec 2020 20:47:16,736 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:16,741 INFO : Inserting CCNYL1_CL45

23 Dec 2020 20:47:16,759 INFO : 79% Done

23 Dec 2020 20:47:18,882 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:18,883 INFO : Inserting OK/SW-cl.2_CL46

23 Dec 2020 20:47:18,895 INFO : 80% Done

23 Dec 2020 20:47:20,473 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:20,475 INFO : Inserting PDK1_CL46

23 Dec 2020 20:47:20,493 INFO : 81% Done

23 Dec 2020 20:47:22,474 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:22,475 INFO : Inserting PLEC1_CL47

23 Dec 2020 20:47:22,490 INFO : 82% Done

23 Dec 2020 20:47:23,692 INFO : 83% Done

23 Dec 2020 20:47:24,642 DEBUG: Total peptides inserted: 2

23 Dec 2020 20:47:24,643 INFO : Inserting CASC3_CL48

23 Dec 2020 20:47:24,656 INFO : 84% Done

23 Dec 2020 20:47:25,455 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:25,456 INFO : Inserting BAT2D1_CL48

23 Dec 2020 20:47:25,472 INFO : 85% Done

23 Dec 2020 20:47:26,909 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:26,911 INFO : Inserting LAP2_CL49

23 Dec 2020 20:47:26,929 INFO : 86% Done

23 Dec 2020 20:47:28,953 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:28,954 INFO : Inserting TB7_CL49

23 Dec 2020 20:47:28,972 INFO : 87% Done

23 Dec 2020 20:47:30,664 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:30,665 INFO : Inserting IQGAP3_CL50

23 Dec 2020 20:47:30,683 INFO : 88% Done

23 Dec 2020 20:47:32,449 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:32,450 INFO : Inserting NFATC2IP_CL50

23 Dec 2020 20:47:32,464 INFO : 89% Done

23 Dec 2020 20:47:33,155 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:33,156 INFO : Inserting BAF45D_CL51

23 Dec 2020 20:47:33,169 INFO : 90% Done

23 Dec 2020 20:47:33,370 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:33,371 INFO : Inserting PP8000_CL51

23 Dec 2020 20:47:33,386 INFO : 91% Done

23 Dec 2020 20:47:33,604 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:33,605 INFO : Inserting HSPC075_CL52

23 Dec 2020 20:47:33,619 INFO : 93% Done

23 Dec 2020 20:47:33,831 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:33,832 INFO : Inserting C13orf8_CL52

23 Dec 2020 20:47:34,057 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:34,058 INFO : Inserting JUND_CL53

23 Dec 2020 20:47:34,074 INFO : 94% Done

23 Dec 2020 20:47:34,317 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:34,318 INFO : Inserting CLTA_CL53

23 Dec 2020 20:47:34,332 INFO : 95% Done

23 Dec 2020 20:47:34,710 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:34,711 INFO : Inserting KIAA0035_CL54

23 Dec 2020 20:47:34,725 INFO : 96% Done

23 Dec 2020 20:47:34,959 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:34,960 INFO : Inserting AP1GBP1_CL55

23 Dec 2020 20:47:34,974 INFO : 97% Done

23 Dec 2020 20:47:35,194 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:35,195 INFO : Inserting CIN85_CL55

23 Dec 2020 20:47:35,211 INFO : 98% Done

23 Dec 2020 20:47:35,433 DEBUG: Total peptides inserted: 1

23 Dec 2020 20:47:35,434 INFO : None of the 108829 TransitionChromInfos in the file were imported because they exceed the limit of 100000

23 Dec 2020 21:10:31,335 INFO : Updated 18167 PrecursorChromInfos with transition chromatogram index information

23 Dec 2020 21:10:31,364 INFO : Done parsing Skyline document.

23 Dec 2020 21:10:31,367 INFO : Creating and populating temp tables for Proportion values

23 Dec 2020 21:10:31,598 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

23 Dec 2020 21:10:34,365 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

23 Dec 2020 21:10:34,992 INFO : Cleaning up temp tables

23 Dec 2020 21:10:35,268 INFO : Completed import of Skyline document from LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.sky.zip

23 Dec 2020 21:10:35,282 INFO : 100% Done

23 Dec 2020 21:10:35,374 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'