• Sign In
  1. Pipeline Jobs

Running LINCS pipeline for: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29

P100_GctMaker

Job Status

Created: 2021-01-24 12:13:10
Modified: 2021-01-24 12:39:32
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2021-01-24_12-13-10.log
Files: LincsPSP_LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_2021-01-24_12-13-10.log
Show Grid Browse Files

Log File


24 Jan 2021 12:13:10,891 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
24 Jan 2021 12:13:10,892 INFO : =======================================
24 Jan 2021 12:23:31,784 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:23:31,806 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.sky.zip
24 Jan 2021 12:23:31,854 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:23:31,874 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/0d104a02-a49c-4ca0-9039-60d43711f563/status
24 Jan 2021 12:23:51,884 INFO : Cromwell job status: Running
24 Jan 2021 12:24:31,907 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:24:31,909 INFO : Cromwell job completed successfully
24 Jan 2021 12:24:31,910 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:38:51,209 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:38:51,219 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
24 Jan 2021 12:38:51,220 INFO : Submitting job for runId: 98869, name: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29
24 Jan 2021 12:38:51,222 INFO : Looking for existing job with name LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_p100_gctmaker
24 Jan 2021 12:38:51,351 INFO : PSP job name: LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_p100_gctmaker
24 Jan 2021 12:38:51,352 INFO : Sending JSON:
24 Jan 2021 12:38:51,352 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL3.gct"
  }}
}
24 Jan 2021 12:38:51,353 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:38:51,538 INFO : Response code - 200
24 Jan 2021 12:38:51,539 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600ddadba1b42e001124f451","created":"2021-01-24T20:38:51.427Z","last_modified":"2021-01-24T20:38:51.427Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate17_annotated_minimized_2018-05-02_17-35-29.cfg"}}}
24 Jan 2021 12:38:51,539 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:38:51,541 INFO : Checking status of job 600ddadba1b42e001124f451
24 Jan 2021 12:38:51,668 INFO : Status: Waiting_To_Download
24 Jan 2021 12:39:11,671 INFO : Checking status of job 600ddadba1b42e001124f451
24 Jan 2021 12:39:11,963 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:39:31,966 INFO : Checking status of job 600ddadba1b42e001124f451
24 Jan 2021 12:39:32,250 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:39:32,250 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:39:32,251 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:39:32,252 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'