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Running LINCS pipeline for: LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19

P100_GctMaker

Job Status

Created: 2021-01-24 12:13:07
Modified: 2021-01-24 12:38:51
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_2021-01-24_12-13-06.log
Files: LincsPSP_LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_2021-01-24_12-13-06.log
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Log File


24 Jan 2021 12:13:07,186 INFO : Running LINCS pipeline for:  LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19
24 Jan 2021 12:13:07,198 INFO : =======================================
24 Jan 2021 12:22:31,605 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:22:31,618 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19.sky.zip
24 Jan 2021 12:22:31,691 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:22:31,708 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/545a1c48-a055-415e-998a-720bbc8258ba/status
24 Jan 2021 12:22:51,729 INFO : Cromwell job status: Running
24 Jan 2021 12:23:31,758 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:23:31,759 INFO : Cromwell job completed successfully
24 Jan 2021 12:23:31,761 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:38:10,015 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:38:10,027 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19
24 Jan 2021 12:38:10,028 INFO : Submitting job for runId: 98889, name: LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19
24 Jan 2021 12:38:10,030 INFO : Looking for existing job with name LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_p100_gctmaker
24 Jan 2021 12:38:10,160 INFO : PSP job name: LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_p100_gctmaker
24 Jan 2021 12:38:10,162 INFO : Sending JSON:
24 Jan 2021 12:38:10,163 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_LVL3.gct"
  }}
}
24 Jan 2021 12:38:10,164 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:38:10,403 INFO : Response code - 200
24 Jan 2021 12:38:10,404 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600ddab21dd2560011c0860e","created":"2021-01-24T20:38:10.237Z","last_modified":"2021-01-24T20:38:10.237Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate18_annotated_minimized_2020-01-08_17-11-19.cfg"}}}
24 Jan 2021 12:38:10,405 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:38:10,409 INFO : Checking status of job 600ddab21dd2560011c0860e
24 Jan 2021 12:38:10,538 INFO : Status: Waiting_To_Download
24 Jan 2021 12:38:30,541 INFO : Checking status of job 600ddab21dd2560011c0860e
24 Jan 2021 12:38:30,829 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:38:50,834 INFO : Checking status of job 600ddab21dd2560011c0860e
24 Jan 2021 12:38:51,191 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:38:51,192 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:38:51,193 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:38:51,194 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'