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Running LINCS pipeline for: LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22

P100_GctMaker

Job Status

Created: 2021-01-24 12:13:03
Modified: 2021-01-24 12:38:09
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_2021-01-24_12-13-02.log
Files: LincsPSP_LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_2021-01-24_12-13-02.log
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Log File


24 Jan 2021 12:13:03,082 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22
24 Jan 2021 12:13:03,113 INFO : =======================================
24 Jan 2021 12:21:31,348 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:21:31,369 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22.sky.zip
24 Jan 2021 12:21:31,492 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:21:31,507 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/aa543512-ba98-46dd-b82c-5e617b86e345/status
24 Jan 2021 12:21:51,520 INFO : Cromwell job status: Running
24 Jan 2021 12:22:31,546 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:22:31,547 INFO : Cromwell job completed successfully
24 Jan 2021 12:22:31,550 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:37:28,870 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:37:28,890 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22
24 Jan 2021 12:37:28,891 INFO : Submitting job for runId: 98870, name: LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22
24 Jan 2021 12:37:28,894 INFO : Looking for existing job with name LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_p100_gctmaker
24 Jan 2021 12:37:29,024 INFO : PSP job name: LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_p100_gctmaker
24 Jan 2021 12:37:29,025 INFO : Sending JSON:
24 Jan 2021 12:37:29,025 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_LVL3.gct"
  }}
}
24 Jan 2021 12:37:29,026 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:37:29,208 INFO : Response code - 200
24 Jan 2021 12:37:29,209 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600dda891dd2560011c0860d","created":"2021-01-24T20:37:29.099Z","last_modified":"2021-01-24T20:37:29.099Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate19_annotated_minimized_2018-05-02_17-18-22.cfg"}}}
24 Jan 2021 12:37:29,210 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:37:29,212 INFO : Checking status of job 600dda891dd2560011c0860d
24 Jan 2021 12:37:29,407 INFO : Status: Waiting_To_Download
24 Jan 2021 12:37:49,410 INFO : Checking status of job 600dda891dd2560011c0860d
24 Jan 2021 12:37:49,691 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:38:09,693 INFO : Checking status of job 600dda891dd2560011c0860d
24 Jan 2021 12:38:09,988 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:38:09,989 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:38:09,989 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:38:09,990 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'