• Sign In
  1. Pipeline Jobs

Running LINCS pipeline for: LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33

P100_GctMaker

Job Status

Created: 2021-01-24 12:12:59
Modified: 2021-01-24 12:37:28
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_2021-01-24_12-12-58.log
Files: LincsPSP_LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_2021-01-24_12-12-58.log
Show Grid Browse Files

Log File


24 Jan 2021 12:12:59,198 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33
24 Jan 2021 12:12:59,223 INFO : =======================================
24 Jan 2021 12:20:31,111 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:20:31,120 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33.sky.zip
24 Jan 2021 12:20:31,241 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:20:31,261 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/f144f1e3-adb2-417d-a7ee-120ed34ecc25/status
24 Jan 2021 12:20:51,284 INFO : Cromwell job status: Running
24 Jan 2021 12:21:31,306 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:21:31,308 INFO : Cromwell job completed successfully
24 Jan 2021 12:21:31,309 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:36:47,671 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:36:47,720 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33
24 Jan 2021 12:36:47,721 INFO : Submitting job for runId: 98871, name: LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33
24 Jan 2021 12:36:47,724 INFO : Looking for existing job with name LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_p100_gctmaker
24 Jan 2021 12:36:47,856 INFO : PSP job name: LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_p100_gctmaker
24 Jan 2021 12:36:47,857 INFO : Sending JSON:
24 Jan 2021 12:36:47,858 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_LVL3.gct"
  }}
}
24 Jan 2021 12:36:47,859 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:36:48,044 INFO : Response code - 200
24 Jan 2021 12:36:48,045 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600dda5fa1b42e001124f450","created":"2021-01-24T20:36:47.932Z","last_modified":"2021-01-24T20:36:47.932Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate20_annotated_minimized_2018-05-02_21-04-33.cfg"}}}
24 Jan 2021 12:36:48,046 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:36:48,049 INFO : Checking status of job 600dda5fa1b42e001124f450
24 Jan 2021 12:36:48,179 INFO : Status: Waiting_To_Download
24 Jan 2021 12:37:08,182 INFO : Checking status of job 600dda5fa1b42e001124f450
24 Jan 2021 12:37:08,464 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:37:28,467 INFO : Checking status of job 600dda5fa1b42e001124f450
24 Jan 2021 12:37:28,834 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:37:28,835 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:37:28,835 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:37:28,836 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'