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Running LINCS pipeline for: LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44

P100_GctMaker

Job Status

Created: 2021-01-24 12:12:46
Modified: 2021-01-24 12:35:25
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_2021-01-24_12-12-46.log
Files: LincsPSP_LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_2021-01-24_12-12-46.log
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Log File


24 Jan 2021 12:12:46,556 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44
24 Jan 2021 12:12:46,580 INFO : =======================================
24 Jan 2021 12:17:10,401 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:17:10,407 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44.sky.zip
24 Jan 2021 12:17:10,517 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:17:10,542 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/8bb0d15c-eea5-481d-a60d-bb1493cd6d12/status
24 Jan 2021 12:17:30,551 INFO : Cromwell job status: Running
24 Jan 2021 12:18:10,574 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:18:10,575 INFO : Cromwell job completed successfully
24 Jan 2021 12:18:10,577 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:34:43,884 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:34:43,892 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44
24 Jan 2021 12:34:43,893 INFO : Submitting job for runId: 98874, name: LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44
24 Jan 2021 12:34:43,895 INFO : Looking for existing job with name LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_p100_gctmaker
24 Jan 2021 12:34:44,293 INFO : PSP job name: LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_p100_gctmaker
24 Jan 2021 12:34:44,294 INFO : Sending JSON:
24 Jan 2021 12:34:44,294 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_LVL3.gct"
  }}
}
24 Jan 2021 12:34:44,295 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:34:44,551 INFO : Response code - 200
24 Jan 2021 12:34:44,552 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600dd9e41dd2560011c0860b","created":"2021-01-24T20:34:44.372Z","last_modified":"2021-01-24T20:34:44.372Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate24_annotated_minimized_2018-05-02_19-07-44.cfg"}}}
24 Jan 2021 12:34:44,553 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:34:44,555 INFO : Checking status of job 600dd9e41dd2560011c0860b
24 Jan 2021 12:34:44,681 INFO : Status: Waiting_To_Download
24 Jan 2021 12:35:04,693 INFO : Checking status of job 600dd9e41dd2560011c0860b
24 Jan 2021 12:35:05,013 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:35:25,016 INFO : Checking status of job 600dd9e41dd2560011c0860b
24 Jan 2021 12:35:25,297 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:35:25,298 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:35:25,298 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:35:25,299 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'