• Sign In
  1. Pipeline Jobs

Running LINCS pipeline for: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47

P100_GctMaker

Job Status

Created: 2021-01-24 12:12:39
Modified: 2021-01-24 12:32:59
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2021-01-24_12-12-39.log
Files: LincsPSP_LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_2021-01-24_12-12-39.log
Show Grid Browse Files

Log File


24 Jan 2021 12:12:39,423 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
24 Jan 2021 12:12:39,438 INFO : =======================================
24 Jan 2021 12:14:50,055 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:14:50,056 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.sky.zip
24 Jan 2021 12:14:50,136 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:14:50,154 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/ec091f9f-7009-489e-8625-0f9c0aee7e67/status
24 Jan 2021 12:15:10,166 INFO : Cromwell job status: Running
24 Jan 2021 12:16:10,199 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:16:10,200 INFO : Cromwell job completed successfully
24 Jan 2021 12:16:10,202 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:32:18,828 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:32:18,873 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
24 Jan 2021 12:32:18,873 INFO : Submitting job for runId: 98875, name: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47
24 Jan 2021 12:32:18,876 INFO : Looking for existing job with name LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_p100_gctmaker
24 Jan 2021 12:32:19,005 INFO : PSP job name: LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_p100_gctmaker
24 Jan 2021 12:32:19,006 INFO : Sending JSON:
24 Jan 2021 12:32:19,007 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL3.gct"
  }}
}
24 Jan 2021 12:32:19,008 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:32:19,208 INFO : Response code - 200
24 Jan 2021 12:32:19,209 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600dd953a1b42e001124f44d","created":"2021-01-24T20:32:19.082Z","last_modified":"2021-01-24T20:32:19.082Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate27_annotated_minimized_2018-05-02_19-16-47.cfg"}}}
24 Jan 2021 12:32:19,209 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:32:19,211 INFO : Checking status of job 600dd953a1b42e001124f44d
24 Jan 2021 12:32:19,339 INFO : Status: Waiting_To_Download
24 Jan 2021 12:32:39,343 INFO : Checking status of job 600dd953a1b42e001124f44d
24 Jan 2021 12:32:39,618 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:32:59,620 INFO : Checking status of job 600dd953a1b42e001124f44d
24 Jan 2021 12:32:59,902 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:32:59,902 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:32:59,903 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:32:59,903 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'