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Running LINCS pipeline for: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02

P100_GctMaker

Job Status

Created: 2021-01-24 12:12:34
Modified: 2021-01-24 12:32:18
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2021-01-24_12-12-34.log
Files: LincsPSP_LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_2021-01-24_12-12-34.log
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Log File


24 Jan 2021 12:12:34,450 INFO : Running LINCS pipeline for:  LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
24 Jan 2021 12:12:34,475 INFO : =======================================
24 Jan 2021 12:13:49,912 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 12:13:49,913 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.sky.zip
24 Jan 2021 12:13:49,967 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 12:13:49,991 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/1c33b45b-be5c-4d73-aa92-a17eb2497d99/status
24 Jan 2021 12:14:10,002 INFO : Cromwell job status: Running
24 Jan 2021 12:14:50,027 INFO : Cromwell job status: Succeeded
24 Jan 2021 12:14:50,029 INFO : Cromwell job completed successfully
24 Jan 2021 12:14:50,030 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 12:31:37,663 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 12:31:37,683 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
24 Jan 2021 12:31:37,687 INFO : Submitting job for runId: 98891, name: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02
24 Jan 2021 12:31:37,689 INFO : Looking for existing job with name LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_p100_gctmaker
24 Jan 2021 12:31:37,828 INFO : PSP job name: LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_p100_gctmaker
24 Jan 2021 12:31:37,829 INFO : Sending JSON:
24 Jan 2021 12:31:37,830 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL3.gct"
  }}
}
24 Jan 2021 12:31:37,831 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 12:31:38,027 INFO : Response code - 200
24 Jan 2021 12:31:38,028 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600dd929a1b42e001124f44c","created":"2021-01-24T20:31:37.903Z","last_modified":"2021-01-24T20:31:37.903Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate28_annotated_minimized_2018-05-02_18-51-02.cfg"}}}
24 Jan 2021 12:31:38,029 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 12:31:38,031 INFO : Checking status of job 600dd929a1b42e001124f44c
24 Jan 2021 12:31:38,159 INFO : Status: Waiting_To_Download
24 Jan 2021 12:31:58,161 INFO : Checking status of job 600dd929a1b42e001124f44c
24 Jan 2021 12:31:58,523 INFO : Status: created LVL 3 GCT
24 Jan 2021 12:32:18,526 INFO : Checking status of job 600dd929a1b42e001124f44c
24 Jan 2021 12:32:18,811 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:32:18,812 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 12:32:18,812 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 12:32:18,813 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'