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Running LINCS pipeline for: LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32

P100_GctMaker

Job Status

Created: 2021-01-24 07:01:37
Modified: 2021-01-24 08:18:14
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_2021-01-24_07-01-37.log
Files: LincsPSP_LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_2021-01-24_07-01-37.log
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Log File


24 Jan 2021 07:01:37,902 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32
24 Jan 2021 07:01:37,936 INFO : =======================================
24 Jan 2021 07:25:38,350 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:25:38,380 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32.sky.zip
24 Jan 2021 07:25:38,481 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:25:38,497 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/85b4bca0-18f6-40c6-b290-5f3217e3a52c/status
24 Jan 2021 07:25:58,509 INFO : Cromwell job status: Running
24 Jan 2021 07:26:58,540 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:26:58,541 INFO : Cromwell job completed successfully
24 Jan 2021 07:26:58,542 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 08:17:33,127 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 08:17:33,156 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32
24 Jan 2021 08:17:33,157 INFO : Submitting job for runId: 98876, name: LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32
24 Jan 2021 08:17:33,160 INFO : Looking for existing job with name LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_p100_gctmaker
24 Jan 2021 08:17:33,289 INFO : PSP job name: LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_p100_gctmaker
24 Jan 2021 08:17:33,291 INFO : Sending JSON:
24 Jan 2021 08:17:33,292 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_LVL3.gct"
  }}
}
24 Jan 2021 08:17:33,293 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 08:17:33,482 INFO : Response code - 200
24 Jan 2021 08:17:33,483 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d9d9d1dd2560011c08605","created":"2021-01-24T16:17:33.366Z","last_modified":"2021-01-24T16:17:33.366Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate30_annotated_minimized_2018-05-02_18-33-32.cfg"}}}
24 Jan 2021 08:17:33,484 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 08:17:33,486 INFO : Checking status of job 600d9d9d1dd2560011c08605
24 Jan 2021 08:17:33,615 INFO : Status: Waiting_To_Download
24 Jan 2021 08:17:53,618 INFO : Checking status of job 600d9d9d1dd2560011c08605
24 Jan 2021 08:17:53,909 INFO : Status: created LVL 3 GCT
24 Jan 2021 08:18:13,912 INFO : Checking status of job 600d9d9d1dd2560011c08605
24 Jan 2021 08:18:14,288 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 08:18:14,289 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 08:18:14,290 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 08:18:14,291 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'