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Running LINCS pipeline for: LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17

P100_GctMaker

Job Status

Created: 2021-01-24 07:01:33
Modified: 2021-01-24 08:17:33
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_2021-01-24_07-01-32.log
Files: LincsPSP_LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_2021-01-24_07-01-32.log
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Log File


24 Jan 2021 07:01:33,088 INFO : Running LINCS pipeline for:  LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17
24 Jan 2021 07:01:33,094 INFO : =======================================
24 Jan 2021 07:24:18,118 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:24:18,141 INFO : Starting task to create L2 GCT for LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17.sky.zip
24 Jan 2021 07:24:18,241 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:24:18,257 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/387108a3-e52f-437d-ad27-97ccc9fb414e/status
24 Jan 2021 07:24:38,269 INFO : Cromwell job status: Running
24 Jan 2021 07:25:38,306 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:25:38,308 INFO : Cromwell job completed successfully
24 Jan 2021 07:25:38,310 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 08:16:51,995 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 08:16:52,036 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17
24 Jan 2021 08:16:52,037 INFO : Submitting job for runId: 98893, name: LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17
24 Jan 2021 08:16:52,040 INFO : Looking for existing job with name LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_p100_gctmaker
24 Jan 2021 08:16:52,169 INFO : PSP job name: LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_p100_gctmaker
24 Jan 2021 08:16:52,170 INFO : Sending JSON:
24 Jan 2021 08:16:52,171 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_LVL3.gct"
  }}
}
24 Jan 2021 08:16:52,172 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 08:16:52,382 INFO : Response code - 200
24 Jan 2021 08:16:52,383 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d9d74a1b42e001124f443","created":"2021-01-24T16:16:52.247Z","last_modified":"2021-01-24T16:16:52.247Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_PRM_Plate31_annotated_minimized_2018-05-02_18-00-17.cfg"}}}
24 Jan 2021 08:16:52,384 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 08:16:52,387 INFO : Checking status of job 600d9d74a1b42e001124f443
24 Jan 2021 08:16:52,515 INFO : Status: Waiting_To_Download
24 Jan 2021 08:17:12,519 INFO : Checking status of job 600d9d74a1b42e001124f443
24 Jan 2021 08:17:12,806 INFO : Status: created LVL 3 GCT
24 Jan 2021 08:17:32,809 INFO : Checking status of job 600d9d74a1b42e001124f443
24 Jan 2021 08:17:33,097 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 08:17:33,098 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 08:17:33,098 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 08:17:33,099 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'