• Sign In
  1. Pipeline Jobs

Running LINCS pipeline for: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21

P100_GctMaker

Job Status

Created: 2021-01-24 07:01:19
Modified: 2021-01-24 08:15:29
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2021-01-24_07-01-19.log
Files: LincsPSP_LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_2021-01-24_07-01-19.log
Show Grid Browse Files

Log File


24 Jan 2021 07:01:19,870 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
24 Jan 2021 07:01:19,886 INFO : =======================================
24 Jan 2021 07:20:17,433 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:20:17,446 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.sky.zip
24 Jan 2021 07:20:17,521 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:20:17,539 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/965e0894-0245-4804-aba7-f57799b763b4/status
24 Jan 2021 07:20:37,553 INFO : Cromwell job status: Running
24 Jan 2021 07:21:37,589 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:21:37,590 INFO : Cromwell job completed successfully
24 Jan 2021 07:21:37,593 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 08:14:28,004 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 08:14:28,049 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
24 Jan 2021 08:14:28,050 INFO : Submitting job for runId: 98878, name: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21
24 Jan 2021 08:14:28,053 INFO : Looking for existing job with name LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_p100_gctmaker
24 Jan 2021 08:14:28,183 INFO : PSP job name: LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_p100_gctmaker
24 Jan 2021 08:14:28,185 INFO : Sending JSON:
24 Jan 2021 08:14:28,185 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL3.gct"
  }}
}
24 Jan 2021 08:14:28,186 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 08:14:28,426 INFO : Response code - 200
24 Jan 2021 08:14:28,427 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d9ce4a1b42e001124f441","created":"2021-01-24T16:14:28.258Z","last_modified":"2021-01-24T16:14:28.258Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate34_annotated_minimized_2019-08-30_17-25-21.cfg"}}}
24 Jan 2021 08:14:28,428 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 08:14:28,431 INFO : Checking status of job 600d9ce4a1b42e001124f441
24 Jan 2021 08:14:28,559 INFO : Status: Waiting_To_Download
24 Jan 2021 08:14:48,562 INFO : Checking status of job 600d9ce4a1b42e001124f441
24 Jan 2021 08:14:48,849 INFO : Status: created LVL2 GCT
24 Jan 2021 08:15:08,851 INFO : Checking status of job 600d9ce4a1b42e001124f441
24 Jan 2021 08:15:09,137 INFO : Status: created LVL 4 GCT
24 Jan 2021 08:15:29,140 INFO : Checking status of job 600d9ce4a1b42e001124f441
24 Jan 2021 08:15:29,502 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 08:15:29,503 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 08:15:29,504 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 08:15:29,505 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'