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Running LINCS pipeline for: LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58

P100_GctMaker

Job Status

Created: 2021-01-24 07:01:10
Modified: 2021-01-24 07:59:53
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_2021-01-24_07-01-09.log
Files: LincsPSP_LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_2021-01-24_07-01-09.log
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Log File


24 Jan 2021 07:01:10,491 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58
24 Jan 2021 07:01:10,526 INFO : =======================================
24 Jan 2021 07:17:37,014 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:17:37,022 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58.sky.zip
24 Jan 2021 07:17:37,083 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:17:37,100 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/e3ec83a4-f385-4528-a2e2-09063bfc93d3/status
24 Jan 2021 07:17:57,113 INFO : Cromwell job status: Running
24 Jan 2021 07:18:57,152 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:18:57,154 INFO : Cromwell job completed successfully
24 Jan 2021 07:18:57,157 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 07:59:12,590 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 07:59:12,605 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58
24 Jan 2021 07:59:12,606 INFO : Submitting job for runId: 98880, name: LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58
24 Jan 2021 07:59:12,608 INFO : Looking for existing job with name LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_p100_gctmaker
24 Jan 2021 07:59:12,735 INFO : PSP job name: LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_p100_gctmaker
24 Jan 2021 07:59:12,736 INFO : Sending JSON:
24 Jan 2021 07:59:12,737 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_LVL3.gct"
  }}
}
24 Jan 2021 07:59:12,738 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 07:59:12,933 INFO : Response code - 200
24 Jan 2021 07:59:12,934 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d99501dd2560011c08603","created":"2021-01-24T15:59:12.811Z","last_modified":"2021-01-24T15:59:12.811Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate59a_annotated_minimized_2018-11-30_14-13-58.cfg"}}}
24 Jan 2021 07:59:12,935 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 07:59:12,937 INFO : Checking status of job 600d99501dd2560011c08603
24 Jan 2021 07:59:13,063 INFO : Status: Waiting_To_Download
24 Jan 2021 07:59:33,066 INFO : Checking status of job 600d99501dd2560011c08603
24 Jan 2021 07:59:33,349 INFO : Status: created LVL 3 GCT
24 Jan 2021 07:59:53,352 INFO : Checking status of job 600d99501dd2560011c08603
24 Jan 2021 07:59:53,699 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:59:53,699 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:59:53,700 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 07:59:53,701 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'