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Running LINCS pipeline for: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06

P100_GctMaker

Job Status

Created: 2021-01-24 06:59:03
Modified: 2021-01-24 07:58:31
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_2021-01-24_06-59-03.log
Files: LincsPSP_LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_2021-01-24_06-59-03.log
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Log File


24 Jan 2021 06:59:03,853 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
24 Jan 2021 06:59:03,854 INFO : =======================================
24 Jan 2021 07:14:56,595 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:14:56,617 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06.sky.zip
24 Jan 2021 07:14:56,699 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:14:56,715 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/13b7650f-5634-403a-a139-a6a641649fe0/status
24 Jan 2021 07:15:16,727 INFO : Cromwell job status: Running
24 Jan 2021 07:16:16,772 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:16:16,774 INFO : Cromwell job completed successfully
24 Jan 2021 07:16:16,776 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 07:57:49,959 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 07:57:49,987 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
24 Jan 2021 07:57:49,988 INFO : Submitting job for runId: 98882, name: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
24 Jan 2021 07:57:50,001 INFO : Looking for existing job with name LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_p100_gctmaker
24 Jan 2021 07:57:50,461 INFO : PSP job name: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_p100_gctmaker
24 Jan 2021 07:57:50,468 INFO : Sending JSON:
24 Jan 2021 07:57:50,469 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL3.gct"
  }}
}
24 Jan 2021 07:57:50,470 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 07:57:50,686 INFO : Response code - 200
24 Jan 2021 07:57:50,693 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d98fea1b42e001124f43c","created":"2021-01-24T15:57:50.547Z","last_modified":"2021-01-24T15:57:50.547Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06.cfg"}}}
24 Jan 2021 07:57:50,694 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 07:57:50,697 INFO : Checking status of job 600d98fea1b42e001124f43c
24 Jan 2021 07:57:50,827 INFO : Status: Waiting_To_Download
24 Jan 2021 07:58:10,839 INFO : Checking status of job 600d98fea1b42e001124f43c
24 Jan 2021 07:58:11,126 INFO : Status: created LVL 3 GCT
24 Jan 2021 07:58:31,130 INFO : Checking status of job 600d98fea1b42e001124f43c
24 Jan 2021 07:58:31,422 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:58:31,423 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:58:31,424 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 07:58:31,425 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'