• Sign In
  1. Pipeline Jobs

Running LINCS pipeline for: LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05

P100_GctMaker

Job Status

Created: 2021-01-24 06:58:59
Modified: 2021-01-24 07:56:21
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_2021-01-24_06-58-58.log
Files: LincsPSP_LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_2021-01-24_06-58-58.log
Show Grid Browse Files

Log File


24 Jan 2021 06:58:59,206 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05
24 Jan 2021 06:58:59,220 INFO : =======================================
24 Jan 2021 07:13:36,395 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:13:36,415 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05.sky.zip
24 Jan 2021 07:13:36,500 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:13:36,519 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/bf6c1ae6-122d-4b16-beb2-29669eae6739/status
24 Jan 2021 07:13:56,531 INFO : Cromwell job status: Running
24 Jan 2021 07:14:56,564 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:14:56,565 INFO : Cromwell job completed successfully
24 Jan 2021 07:14:56,568 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 07:55:40,664 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 07:55:40,672 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05
24 Jan 2021 07:55:40,673 INFO : Submitting job for runId: 98883, name: LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05
24 Jan 2021 07:55:40,676 INFO : Looking for existing job with name LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_p100_gctmaker
24 Jan 2021 07:55:40,807 INFO : PSP job name: LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_p100_gctmaker
24 Jan 2021 07:55:40,808 INFO : Sending JSON:
24 Jan 2021 07:55:40,809 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_LVL3.gct"
  }}
}
24 Jan 2021 07:55:40,810 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 07:55:41,004 INFO : Response code - 200
24 Jan 2021 07:55:41,005 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d987c1dd2560011c08601","created":"2021-01-24T15:55:40.883Z","last_modified":"2021-01-24T15:55:40.883Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate62_annotated_minimized_2018-04-20_15-55-05.cfg"}}}
24 Jan 2021 07:55:41,006 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 07:55:41,008 INFO : Checking status of job 600d987c1dd2560011c08601
24 Jan 2021 07:55:41,138 INFO : Status: Waiting_To_Download
24 Jan 2021 07:56:01,140 INFO : Checking status of job 600d987c1dd2560011c08601
24 Jan 2021 07:56:01,502 INFO : Status: created LVL 3 GCT
24 Jan 2021 07:56:21,505 INFO : Checking status of job 600d987c1dd2560011c08601
24 Jan 2021 07:56:21,791 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:56:21,792 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:56:21,793 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 07:56:21,794 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'