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Running LINCS pipeline for: LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19

P100_GctMaker

Job Status

Created: 2021-01-24 06:58:48
Modified: 2021-01-24 07:54:59
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100_GctMaker/@files/LincsPSP_LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_2021-01-24_06-58-48.log
Files: LincsPSP_LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_2021-01-24_06-58-48.log
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Log File


24 Jan 2021 06:58:48,822 INFO : Running LINCS pipeline for:  LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19
24 Jan 2021 06:58:48,846 INFO : =======================================
24 Jan 2021 07:10:55,950 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 07:10:55,971 INFO : Starting task to create L2 GCT for LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19.sky.zip
24 Jan 2021 07:10:56,070 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 07:10:56,097 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/99683de5-bb2f-4aff-a2b0-e10d4a5f1e9c/status
24 Jan 2021 07:11:16,112 INFO : Cromwell job status: Running
24 Jan 2021 07:12:16,146 INFO : Cromwell job status: Succeeded
24 Jan 2021 07:12:16,147 INFO : Cromwell job completed successfully
24 Jan 2021 07:12:16,150 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 07:54:18,094 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 07:54:18,109 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19
24 Jan 2021 07:54:18,110 INFO : Submitting job for runId: 98885, name: LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19
24 Jan 2021 07:54:18,113 INFO : Looking for existing job with name LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_p100_gctmaker
24 Jan 2021 07:54:18,308 INFO : PSP job name: LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_p100_gctmaker
24 Jan 2021 07:54:18,310 INFO : Sending JSON:
24 Jan 2021 07:54:18,311 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_p100_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_LVL3.gct"
  }}
}
24 Jan 2021 07:54:18,312 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 07:54:18,540 INFO : Response code - 200
24 Jan 2021 07:54:18,541 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_p100_gctmaker","assay":"P100","status":"Waiting_To_Download","id":"600d982aa1b42e001124f438","created":"2021-01-24T15:54:18.385Z","last_modified":"2021-01-24T15:54:18.385Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100_GctMaker/%40files/GCT/LINCS_P100_DIA_Plate64_annotated_minimized_2018-05-02_20-34-19.cfg"}}}
24 Jan 2021 07:54:18,542 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 07:54:18,545 INFO : Checking status of job 600d982aa1b42e001124f438
24 Jan 2021 07:54:18,672 INFO : Status: Waiting_To_Download
24 Jan 2021 07:54:38,676 INFO : Checking status of job 600d982aa1b42e001124f438
24 Jan 2021 07:54:39,047 INFO : Status: created LVL 3 GCT
24 Jan 2021 07:54:59,051 INFO : Checking status of job 600d982aa1b42e001124f438
24 Jan 2021 07:54:59,342 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:54:59,343 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 07:54:59,343 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 07:54:59,344 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'