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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13

P100

Job Status

Created: 2019-08-16 15:01:04
Modified: 2020-06-01 17:20:42
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100/@files/LincsPSP_LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2019-08-16_15-01-03.log
Files: LincsPSP_LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_2019-08-16_15-01-03.log
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Log File


16 Aug 2019 15:01:04,536 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
16 Aug 2019 15:01:04,537 INFO : =======================================
16 Aug 2019 15:07:56,597 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Aug 2019 15:07:56,597 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
16 Aug 2019 15:07:56,598 INFO : Submitting job for runId: 69181, name: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13
16 Aug 2019 15:07:56,600 INFO : Looking for existing job with name LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_publ
16 Aug 2019 15:07:56,712 INFO : PSP job name: LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_publ
16 Aug 2019 15:07:56,713 INFO : Sending JSON:
16 Aug 2019 15:07:56,714 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_publ",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69181&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL3.gct"
  }}
}
16 Aug 2019 15:07:56,714 INFO : Sending POST request to https://api.clue.io/api/psp
16 Aug 2019 15:07:56,887 INFO : Response code - 200
16 Aug 2019 15:07:56,888 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_publ","assay":"P100","status":"Waiting_To_Download","id":"5d57293c544166e8be58564b","created":"2019-08-16T22:07:56.784Z","last_modified":"2019-08-16T22:07:56.784Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69181&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate66_annotated_minimized_2018-08-31_10-36-13.cfg"}}}
16 Aug 2019 15:07:56,888 INFO : Sent POST request to https://api.clue.io/api/psp
16 Aug 2019 15:07:56,890 INFO : Checking status of job 5d57293c544166e8be58564b
16 Aug 2019 15:07:57,006 INFO : Status: Waiting_To_Download
16 Aug 2019 15:08:17,007 INFO : Checking status of job 5d57293c544166e8be58564b
16 Aug 2019 15:08:17,263 INFO : Status: created LVL 4 GCT
16 Aug 2019 15:08:37,264 INFO : Checking status of job 5d57293c544166e8be58564b
16 Aug 2019 15:08:37,526 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 15:08:37,526 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 15:08:37,526 INFO : Finished running LINCS PSP pipeline.
16 Aug 2019 15:08:37,527 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'