• Sign In
  1. Pipeline Jobs

Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06

P100

Job Status

Created: 2019-08-16 15:00:35
Modified: 2020-06-01 17:20:42
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100/@files/LincsPSP_LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_2019-08-16_15-00-34.log
Files: LincsPSP_LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_2019-08-16_15-00-34.log
Show Grid Browse Files

Log File


16 Aug 2019 15:00:35,553 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
16 Aug 2019 15:00:35,554 INFO : =======================================
16 Aug 2019 15:04:50,749 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Aug 2019 15:04:50,749 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
16 Aug 2019 15:04:50,750 INFO : Submitting job for runId: 69176, name: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06
16 Aug 2019 15:04:50,752 INFO : Looking for existing job with name LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_publ
16 Aug 2019 15:04:50,860 INFO : PSP job name: LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_publ
16 Aug 2019 15:04:50,861 INFO : Sending JSON:
16 Aug 2019 15:04:50,861 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_publ",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69176&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL3.gct"
  }}
}
16 Aug 2019 15:04:50,862 INFO : Sending POST request to https://api.clue.io/api/psp
16 Aug 2019 15:04:51,038 INFO : Response code - 200
16 Aug 2019 15:04:51,039 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_publ","assay":"P100","status":"Waiting_To_Download","id":"5d572882544166e8be585646","created":"2019-08-16T22:04:50.928Z","last_modified":"2019-08-16T22:04:50.928Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69176&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate61_annotated_minimized_2018-02-06_17-09-06.cfg"}}}
16 Aug 2019 15:04:51,039 INFO : Sent POST request to https://api.clue.io/api/psp
16 Aug 2019 15:04:51,042 INFO : Checking status of job 5d572882544166e8be585646
16 Aug 2019 15:04:51,152 INFO : Status: Waiting_To_Download
16 Aug 2019 15:05:11,153 INFO : Checking status of job 5d572882544166e8be585646
16 Aug 2019 15:05:11,406 INFO : Status: created LVL 3 GCT
16 Aug 2019 15:05:31,407 INFO : Checking status of job 5d572882544166e8be585646
16 Aug 2019 15:05:31,663 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 15:05:31,664 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 15:05:31,664 INFO : Finished running LINCS PSP pipeline.
16 Aug 2019 15:05:31,664 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'