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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08

P100

Job Status

Created: 2019-08-16 14:25:24
Modified: 2020-06-01 17:20:42
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100/@files/LincsPSP_LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_2019-08-16_14-25-24.log
Files: LincsPSP_LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_2019-08-16_14-25-24.log
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Log File


16 Aug 2019 14:25:24,589 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08
16 Aug 2019 14:25:24,590 INFO : =======================================
16 Aug 2019 14:30:36,404 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Aug 2019 14:30:36,404 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08
16 Aug 2019 14:30:36,405 INFO : Submitting job for runId: 69173, name: LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08
16 Aug 2019 14:30:36,407 INFO : Looking for existing job with name LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_publ
16 Aug 2019 14:30:36,515 INFO : PSP job name: LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_publ
16 Aug 2019 14:30:36,516 INFO : Sending JSON:
16 Aug 2019 14:30:36,516 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_publ",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69173&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_LVL3.gct"
  }}
}
16 Aug 2019 14:30:36,517 INFO : Sending POST request to https://api.clue.io/api/psp
16 Aug 2019 14:30:36,714 INFO : Response code - 200
16 Aug 2019 14:30:36,714 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_publ","assay":"P100","status":"Waiting_To_Download","id":"5d57207c544166e8be585640","created":"2019-08-16T21:30:36.582Z","last_modified":"2019-08-16T21:30:36.583Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69173&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_DIA_Plate58_annotated_minimized_2017-11-28_11-50-08.cfg"}}}
16 Aug 2019 14:30:36,715 INFO : Sent POST request to https://api.clue.io/api/psp
16 Aug 2019 14:30:36,717 INFO : Checking status of job 5d57207c544166e8be585640
16 Aug 2019 14:30:36,828 INFO : Status: Waiting_To_Download
16 Aug 2019 14:30:56,829 INFO : Checking status of job 5d57207c544166e8be585640
16 Aug 2019 14:30:57,087 INFO : Status: created LVL 3 GCT
16 Aug 2019 14:31:17,087 INFO : Checking status of job 5d57207c544166e8be585640
16 Aug 2019 14:31:17,342 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 14:31:17,342 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 14:31:17,342 INFO : Finished running LINCS PSP pipeline.
16 Aug 2019 14:31:17,343 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'