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Running LINCS pipeline on PSP for: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10

P100

Job Status

Created: 2019-08-16 10:20:19
Modified: 2020-06-01 17:20:42
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/P100/@files/LincsPSP_LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_2019-08-16_10-20-18.log
Files: LincsPSP_LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_2019-08-16_10-20-18.log
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Log File


16 Aug 2019 10:20:18,934 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
16 Aug 2019 10:20:18,935 INFO : =======================================
16 Aug 2019 10:23:35,426 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Aug 2019 10:23:35,426 INFO : Running LINCS PSP pipeline for LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
16 Aug 2019 10:23:35,427 INFO : Submitting job for runId: 69183, name: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10
16 Aug 2019 10:23:35,429 INFO : Looking for existing job with name LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_publ
16 Aug 2019 10:23:35,543 INFO : PSP job name: LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_publ
16 Aug 2019 10:23:35,544 INFO : Sending JSON:
16 Aug 2019 10:23:35,545 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_publ",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69183&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL3.gct"
  }}
}
16 Aug 2019 10:23:35,546 INFO : Sending POST request to https://api.clue.io/api/psp
16 Aug 2019 10:23:35,756 INFO : Response code - 200
16 Aug 2019 10:23:35,757 INFO : Response from server: {"name":"LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_publ","assay":"P100","status":"Waiting_To_Download","id":"5d56e697544166e8be585614","created":"2019-08-16T17:23:35.617Z","last_modified":"2019-08-16T17:23:35.617Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/P100/runGCTReportApi.view?runId=69183&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/P100/%40files/GCT/LINCS_P100_PRM_Plate25_annotated_minimized_2018-05-02_18-24-10.cfg"}}}
16 Aug 2019 10:23:35,758 INFO : Sent POST request to https://api.clue.io/api/psp
16 Aug 2019 10:23:35,760 INFO : Checking status of job 5d56e697544166e8be585614
16 Aug 2019 10:23:35,872 INFO : Status: Waiting_To_Download
16 Aug 2019 10:23:55,872 INFO : Checking status of job 5d56e697544166e8be585614
16 Aug 2019 10:23:56,132 INFO : Status: created LVL 3 GCT
16 Aug 2019 10:24:16,132 INFO : Checking status of job 5d56e697544166e8be585614
16 Aug 2019 10:24:16,389 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 10:24:16,390 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 10:24:16,390 INFO : Finished running LINCS PSP pipeline.
16 Aug 2019 10:24:16,390 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'