Skyline document import - LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky.zip

GCP_GctMaker

Job Status

Created: 2020-12-23 12:01:06
Modified: 2020-12-23 12:29:44
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Skyline document import - LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky.zip
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP_GctMaker/@files/LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky_2020-12-23_12-01-29.log
Files: LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky_2020-12-23_12-01-29.log
Completed Runs: LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky.zip

Log File


23 Dec 2020 12:28:15,337 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
23 Dec 2020 12:28:15,356 INFO : Starting to import Skyline document from LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky.zip
23 Dec 2020 12:28:15,392 INFO : Expanding Histone_2016_updated.blib
23 Dec 2020 12:28:15,462 INFO : Expanding Histone_2016_updated.redundant.blib
23 Dec 2020 12:28:15,478 INFO : Expanding LINCS_GCP_Plate66_annotated_minimized.skyd
23 Dec 2020 12:28:17,688 INFO : Expanding LINCS_GCP_Plate66_annotated_minimized.sky.view
23 Dec 2020 12:28:17,708 INFO : Expanding LINCS_GCP_Plate66_annotated_minimized.sky
23 Dec 2020 12:28:18,307 INFO : 1% Done
23 Dec 2020 12:28:20,463 INFO : Inserting H3K4me0 - BI10003
23 Dec 2020 12:28:20,482 INFO : 2% Done
23 Dec 2020 12:28:20,943 INFO : Inserting H3K4me1 - BI10004
23 Dec 2020 12:28:21,403 INFO : Inserting H3K4me2 - BI10005
23 Dec 2020 12:28:21,429 INFO : 3% Done
23 Dec 2020 12:28:22,140 INFO : Inserting H3K4me3 - BI10006
23 Dec 2020 12:28:22,176 INFO : 5% Done
23 Dec 2020 12:28:23,204 INFO : Inserting H3K4ac1 - BI10007
23 Dec 2020 12:28:23,218 INFO : 6% Done
23 Dec 2020 12:28:23,584 INFO : Inserting H3K9me0K14ac0 - BI10008
23 Dec 2020 12:28:24,353 INFO : Inserting H3K9me1K14ac0 - BI10009
23 Dec 2020 12:28:24,374 INFO : 7% Done
23 Dec 2020 12:28:24,967 INFO : Inserting H3K9me2K14ac0 - BI10010
23 Dec 2020 12:28:24,988 INFO : 8% Done
23 Dec 2020 12:28:25,591 INFO : Inserting H3K9me3K14ac0 - BI10011
23 Dec 2020 12:28:25,611 INFO : 9% Done
23 Dec 2020 12:28:26,494 INFO : Inserting H3K9ac1K14ac0 - BI10012
23 Dec 2020 12:28:26,514 INFO : 10% Done
23 Dec 2020 12:28:27,257 INFO : Inserting H3K9me0K14ac1 - BI10013
23 Dec 2020 12:28:27,835 INFO : Inserting H3K9me1K14ac1 - BI10014
23 Dec 2020 12:28:27,855 INFO : 11% Done
23 Dec 2020 12:28:28,398 INFO : Inserting H3K9me2K14ac1 - BI10015
23 Dec 2020 12:28:28,413 INFO : 12% Done
23 Dec 2020 12:28:28,831 INFO : Inserting H3K9me3K14ac1 - BI10016
23 Dec 2020 12:28:28,840 INFO : 13% Done
23 Dec 2020 12:28:29,388 INFO : Inserting H3K9ac1K14ac1 - BI10017
23 Dec 2020 12:28:29,407 INFO : 14% Done
23 Dec 2020 12:28:29,947 INFO : Inserting H3K9me0S10ph1K14ac0 - BI10018
23 Dec 2020 12:28:30,528 INFO : Inserting H3K9me1S10ph1K14ac0 - BI10019
23 Dec 2020 12:28:31,469 INFO : Inserting H3K9me2S10ph1K14ac0 - BI10020
23 Dec 2020 12:28:31,488 INFO : 15% Done
23 Dec 2020 12:28:32,000 INFO : Inserting H3K9me3S10ph1K14ac0 - BI10021
23 Dec 2020 12:28:32,019 INFO : 16% Done
23 Dec 2020 12:28:32,549 INFO : Inserting H3K9ac1S10ph1K14ac0 - BI10022
23 Dec 2020 12:28:32,562 INFO : 17% Done
23 Dec 2020 12:28:32,895 INFO : Inserting H3K9me0S10ph1K14ac1 - BI10023
23 Dec 2020 12:28:32,914 INFO : 18% Done
23 Dec 2020 12:28:33,512 INFO : Inserting H3K9me1S10ph1K14ac1 - BI10024
23 Dec 2020 12:28:34,094 INFO : Inserting H3K9me2S10ph1K14ac1 - BI10025
23 Dec 2020 12:28:34,623 INFO : Inserting H3K9me3S10ph1K14ac1 - BI10026
23 Dec 2020 12:28:34,640 INFO : 19% Done
23 Dec 2020 12:28:35,140 INFO : Inserting H3K9ac1S10ph1K14ac1 - BI10027
23 Dec 2020 12:28:35,509 INFO : Inserting H3K18ac0K23ac0 - BI10028
23 Dec 2020 12:28:35,526 INFO : 20% Done
23 Dec 2020 12:28:35,998 INFO : Inserting H3K18ac1K23ac0 - BI10029
23 Dec 2020 12:28:36,016 INFO : 21% Done
23 Dec 2020 12:28:36,473 INFO : Inserting H3K18ac0K23ac1 - BI10030
23 Dec 2020 12:28:36,490 INFO : 22% Done
23 Dec 2020 12:28:36,951 INFO : Inserting H3K18ac1K23ac1 - BI10031
23 Dec 2020 12:28:38,015 INFO : Inserting H3K18ub1K23ac0 - BI10032
23 Dec 2020 12:28:38,036 INFO : 23% Done
23 Dec 2020 12:28:38,677 INFO : Inserting H3K18ac0K23ub1 - BI10033
23 Dec 2020 12:28:38,696 INFO : 24% Done
23 Dec 2020 12:28:39,236 INFO : Inserting H3K27me0K36me0 - BI10034
23 Dec 2020 12:28:39,263 INFO : 25% Done
23 Dec 2020 12:28:40,100 INFO : Inserting H3K27me0K36me1 - BI10085
23 Dec 2020 12:28:40,125 INFO : 26% Done
23 Dec 2020 12:28:40,853 INFO : Inserting H3K27me0K36me2 - BI10086
23 Dec 2020 12:28:40,873 INFO : 27% Done
23 Dec 2020 12:28:41,422 INFO : Inserting H3K27me0K36me3 - BI10087
23 Dec 2020 12:28:41,481 INFO : 28% Done
23 Dec 2020 12:28:42,071 INFO : Inserting H3K27me1K36me0 - BI10035
23 Dec 2020 12:28:42,099 INFO : 29% Done
23 Dec 2020 12:28:42,932 INFO : Inserting H3K27me1K36me1 - BI10036
23 Dec 2020 12:28:42,952 INFO : 30% Done
23 Dec 2020 12:28:43,572 INFO : Inserting H3K27me1K36me2 - BI10037
23 Dec 2020 12:28:44,577 INFO : Inserting H3K27me1K36me3 - BI10038
23 Dec 2020 12:28:44,598 INFO : 31% Done
23 Dec 2020 12:28:45,625 INFO : Inserting H3K27me2K36me0 - BI10039
23 Dec 2020 12:28:45,643 INFO : 32% Done
23 Dec 2020 12:28:46,481 INFO : Inserting H3K27me2K36me1 - BI10040
23 Dec 2020 12:28:46,500 INFO : 33% Done
23 Dec 2020 12:28:47,334 INFO : Inserting H3K27me2K36me2 - BI10041
23 Dec 2020 12:28:47,359 INFO : 34% Done
23 Dec 2020 12:28:48,789 INFO : Inserting H3K27me2K36me3 - BI10042
23 Dec 2020 12:28:49,612 INFO : Inserting H3K27me3K36me0 - BI10043
23 Dec 2020 12:28:49,631 INFO : 35% Done
23 Dec 2020 12:28:50,459 INFO : Inserting H3K27me3K36me1 - BI10044
23 Dec 2020 12:28:50,482 INFO : 36% Done
23 Dec 2020 12:28:51,603 INFO : Inserting H3K27me3K36me2 - BI10045
23 Dec 2020 12:28:51,624 INFO : 37% Done
23 Dec 2020 12:28:52,582 INFO : Inserting H3K27me3K36me3 - BI10046
23 Dec 2020 12:28:52,612 INFO : 38% Done
23 Dec 2020 12:28:54,152 INFO : Inserting H3K27ac1K36me0 - BI10047
23 Dec 2020 12:28:54,173 INFO : 39% Done
23 Dec 2020 12:28:55,059 INFO : Inserting H3K27ac1K36me1 - BI10048
23 Dec 2020 12:28:55,076 INFO : 40% Done
23 Dec 2020 12:28:55,833 INFO : Inserting H3K27ac1K36me2 - BI10049
23 Dec 2020 12:28:55,850 INFO : 41% Done
23 Dec 2020 12:28:56,699 INFO : Inserting H3K27ac1K36me3 - BI10050
23 Dec 2020 12:28:56,718 INFO : 42% Done
23 Dec 2020 12:28:57,597 INFO : Inserting H3.3K27me0K36me0 - BI10051
23 Dec 2020 12:28:58,387 INFO : Inserting H3NORM(41-49) - BI10052
23 Dec 2020 12:28:58,413 INFO : 43% Done
23 Dec 2020 12:28:59,775 INFO : Inserting H3NORM(41-49) - BI10052p
23 Dec 2020 12:28:59,795 INFO : 44% Done
23 Dec 2020 12:29:00,646 INFO : Inserting H3K56me0 - BI10054
23 Dec 2020 12:29:00,668 INFO : 45% Done
23 Dec 2020 12:29:01,635 INFO : Inserting H3K56me1 - BI10055
23 Dec 2020 12:29:01,655 INFO : 46% Done
23 Dec 2020 12:29:02,825 INFO : Inserting H3K56me2 - BI10056
23 Dec 2020 12:29:03,879 INFO : Inserting H3K56ac1-BI10058
23 Dec 2020 12:29:03,907 INFO : 48% Done
23 Dec 2020 12:29:05,629 INFO : Inserting H3K79me0 - BI10060
23 Dec 2020 12:29:05,649 INFO : 49% Done
23 Dec 2020 12:29:06,664 INFO : Inserting H3K79me1 - BI10061
23 Dec 2020 12:29:06,688 INFO : 50% Done
23 Dec 2020 12:29:07,786 INFO : Inserting H3K79me2 - BI10062
23 Dec 2020 12:29:07,806 INFO : 51% Done
23 Dec 2020 12:29:08,740 INFO : Inserting H4(4to17)ac0me0 - BI10088
23 Dec 2020 12:29:08,783 INFO : 53% Done
23 Dec 2020 12:29:11,025 INFO : Inserting H4(4to17)K5ac1me0_leftpeak - BI10089
23 Dec 2020 12:29:11,052 INFO : 54% Done
23 Dec 2020 12:29:12,296 INFO : Inserting H4(4to17)K12ac1_left peak - BI10091
23 Dec 2020 12:29:12,327 INFO : 55% Done
23 Dec 2020 12:29:14,104 INFO : Inserting H4(4to17)K16ac1me0 - BI10092
23 Dec 2020 12:29:14,126 INFO : 56% Done
23 Dec 2020 12:29:15,193 INFO : Inserting H4(4to17)K16ac0me1 - BI10102
23 Dec 2020 12:29:15,238 INFO : 58% Done
23 Dec 2020 12:29:16,970 INFO : Inserting H4(4to17)K5ac1K8ac1me0_left peak - BI10094
23 Dec 2020 12:29:16,984 INFO : 60% Done
23 Dec 2020 12:29:17,577 INFO : Inserting H4(4to17)K5ac1K16ac1me0_right peak - BI10095
23 Dec 2020 12:29:17,603 INFO : 61% Done
23 Dec 2020 12:29:18,315 INFO : Inserting H4(4to17)K8ac1K12ac1me0_left peak - BI10093
23 Dec 2020 12:29:18,339 INFO : 62% Done
23 Dec 2020 12:29:19,092 INFO : Inserting H4(4to17)K12ac1K16ac1me0 - BI10097
23 Dec 2020 12:29:19,123 INFO : 63% Done
23 Dec 2020 12:29:20,010 INFO : Inserting H4(4to17)K8ac1K12ac1K16ac1me0_right peak - BI10098
23 Dec 2020 12:29:20,035 INFO : 65% Done
23 Dec 2020 12:29:20,758 INFO : Inserting H4(4to17)K5ac1K8ac1K12ac1me0_left peak - BI10099
23 Dec 2020 12:29:20,801 INFO : 66% Done
23 Dec 2020 12:29:22,127 INFO : Inserting H4(4to17)K5ac1K8ac1K16ac1me0_right peak - BI10100
23 Dec 2020 12:29:22,157 INFO : 68% Done
23 Dec 2020 12:29:23,055 INFO : Inserting H4(4to17)K5ac1K8ac1K12ac1K16ac1me0 - BI10101
23 Dec 2020 12:29:23,104 INFO : 70% Done
23 Dec 2020 12:29:24,663 INFO : Inserting H4(68-78)AltNorm - BI10108
23 Dec 2020 12:29:24,706 INFO : 73% Done
23 Dec 2020 12:29:26,041 INFO : Inserting H4(68-78)AltNorm - BI10108p
23 Dec 2020 12:29:26,059 INFO : 74% Done
23 Dec 2020 12:29:26,530 INFO : Inserting H4(20to23)K20me0 - BI10103
23 Dec 2020 12:29:27,266 INFO : Inserting H4(20to23)K20me1 - BI10104
23 Dec 2020 12:29:27,287 INFO : 76% Done
23 Dec 2020 12:29:27,909 INFO : Inserting H4(20to23)K20me2 - BI10105
23 Dec 2020 12:29:27,933 INFO : 77% Done
23 Dec 2020 12:29:28,657 INFO : Inserting H4(20to23)K20me3 - BI10106
23 Dec 2020 12:29:28,678 INFO : 78% Done
23 Dec 2020 12:29:29,318 INFO : Inserting H2A(21to29)NORM - BI10109
23 Dec 2020 12:29:29,360 INFO : 80% Done
23 Dec 2020 12:29:30,729 INFO : Done parsing Skyline document.
23 Dec 2020 12:29:30,765 INFO : No group comparisons found.
23 Dec 2020 12:29:30,766 INFO : Calculating calibration curves
23 Dec 2020 12:29:31,334 INFO : 81% Done
23 Dec 2020 12:29:31,933 INFO : 82% Done
23 Dec 2020 12:29:32,789 INFO : 83% Done
23 Dec 2020 12:29:33,648 INFO : 84% Done
23 Dec 2020 12:29:34,278 INFO : 85% Done
23 Dec 2020 12:29:34,855 INFO : 86% Done
23 Dec 2020 12:29:35,263 INFO : 87% Done
23 Dec 2020 12:29:35,601 INFO : 88% Done
23 Dec 2020 12:29:36,026 INFO : 89% Done
23 Dec 2020 12:29:36,334 INFO : 90% Done
23 Dec 2020 12:29:36,765 INFO : 91% Done
23 Dec 2020 12:29:37,158 INFO : 92% Done
23 Dec 2020 12:29:37,472 INFO : 93% Done
23 Dec 2020 12:29:37,837 INFO : 94% Done
23 Dec 2020 12:29:38,220 INFO : 95% Done
23 Dec 2020 12:29:38,654 INFO : 96% Done
23 Dec 2020 12:29:38,999 INFO : 97% Done
23 Dec 2020 12:29:39,462 INFO : 98% Done
23 Dec 2020 12:29:39,631 INFO : Done calculating calibration curves.
23 Dec 2020 12:29:39,633 INFO : Creating and populating temp tables for Proportion values
23 Dec 2020 12:29:39,905 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Dec 2020 12:29:43,741 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Dec 2020 12:29:44,262 INFO : Cleaning up temp tables
23 Dec 2020 12:29:44,510 INFO : Completed import of Skyline document from LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky.zip
23 Dec 2020 12:29:44,515 INFO : 100% Done
23 Dec 2020 12:29:44,578 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'