• Sign In
  1. Pipeline Jobs

Running LINCS pipeline for: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50

GCP_GctMaker

Job Status

Created: 2021-01-24 05:54:27
Modified: 2021-01-24 06:16:37
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP_GctMaker/@files/LincsPSP_LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2021-01-24_05-54-27.log
Files: LincsPSP_LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_2021-01-24_05-54-27.log
Show Grid Browse Files

Log File


24 Jan 2021 05:54:27,813 INFO : Running LINCS pipeline for:  LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
24 Jan 2021 05:54:27,830 INFO : =======================================
24 Jan 2021 06:03:03,014 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
24 Jan 2021 06:03:03,068 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.sky.zip
24 Jan 2021 06:03:03,136 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
24 Jan 2021 06:03:03,163 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/e67dcb4c-8e66-4313-be8b-1396235a3b59/status
24 Jan 2021 06:03:23,174 INFO : Cromwell job status: Running
24 Jan 2021 06:04:23,211 INFO : Cromwell job status: Succeeded
24 Jan 2021 06:04:23,213 INFO : Cromwell job completed successfully
24 Jan 2021 06:04:23,215 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
24 Jan 2021 06:15:56,551 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
24 Jan 2021 06:15:56,563 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
24 Jan 2021 06:15:56,564 INFO : Submitting job for runId: 98839, name: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50
24 Jan 2021 06:15:56,567 INFO : Looking for existing job with name LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_gcp_gctmaker
24 Jan 2021 06:15:56,700 INFO : PSP job name: LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_gcp_gctmaker
24 Jan 2021 06:15:56,701 INFO : Sending JSON:
24 Jan 2021 06:15:56,702 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_gcp_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL3.gct"
  }}
}
24 Jan 2021 06:15:56,703 INFO : Sending POST request to https://api.clue.io/api/psp
24 Jan 2021 06:15:56,905 INFO : Response code - 200
24 Jan 2021 06:15:56,906 INFO : Response from server: {"name":"LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_gcp_gctmaker","assay":"GCP","status":"Waiting_To_Download","id":"600d811ca1b42e001124f42f","created":"2021-01-24T14:15:56.776Z","last_modified":"2021-01-24T14:15:56.776Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.cfg"}}}
24 Jan 2021 06:15:56,907 INFO : Sent POST request to https://api.clue.io/api/psp
24 Jan 2021 06:15:56,911 INFO : Checking status of job 600d811ca1b42e001124f42f
24 Jan 2021 06:15:57,050 INFO : Status: Waiting_To_Download
24 Jan 2021 06:16:17,053 INFO : Checking status of job 600d811ca1b42e001124f42f
24 Jan 2021 06:16:17,345 INFO : Status: created LVL 3 GCT
24 Jan 2021 06:16:37,349 INFO : Checking status of job 600d811ca1b42e001124f42f
24 Jan 2021 06:16:37,726 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 06:16:37,727 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
24 Jan 2021 06:16:37,727 INFO : Finished running LINCS PSP pipeline.
24 Jan 2021 06:16:37,728 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'