• Sign In
  1. Pipeline Jobs

Running LINCS pipeline for: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51

GCP_GctMaker

Job Status

Created: 2021-01-23 20:59:13
Modified: 2021-01-23 21:43:49
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP_GctMaker/@files/LincsPSP_LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2021-01-23_20-59-12.log
Files: LincsPSP_LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2021-01-23_20-59-12.log
Show Grid Browse Files

Log File


23 Jan 2021 20:59:13,143 INFO : Running LINCS pipeline for:  LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
23 Jan 2021 20:59:13,145 INFO : =======================================
23 Jan 2021 21:07:13,185 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
23 Jan 2021 21:07:13,186 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.sky.zip
23 Jan 2021 21:07:13,291 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
23 Jan 2021 21:07:13,309 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/7a034d50-65ec-41ff-a24f-3be7ebdc6139/status
23 Jan 2021 21:07:33,322 INFO : Cromwell job status: Running
23 Jan 2021 21:08:33,358 INFO : Cromwell job status: Succeeded
23 Jan 2021 21:08:33,360 INFO : Cromwell job completed successfully
23 Jan 2021 21:08:33,361 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
23 Jan 2021 21:43:08,789 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
23 Jan 2021 21:43:08,801 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
23 Jan 2021 21:43:08,802 INFO : Submitting job for runId: 98854, name: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
23 Jan 2021 21:43:08,804 INFO : Looking for existing job with name LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_gcp_gctmaker
23 Jan 2021 21:43:09,085 INFO : PSP job name: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_gcp_gctmaker
23 Jan 2021 21:43:09,087 INFO : Sending JSON:
23 Jan 2021 21:43:09,087 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_gcp_gctmaker",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL3.gct"
  }}
}
23 Jan 2021 21:43:09,088 INFO : Sending POST request to https://api.clue.io/api/psp
23 Jan 2021 21:43:09,274 INFO : Response code - 200
23 Jan 2021 21:43:09,275 INFO : Response from server: {"name":"LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_gcp_gctmaker","assay":"GCP","status":"Waiting_To_Download","id":"600d08ed1dd2560011c085dc","created":"2021-01-24T05:43:09.162Z","last_modified":"2021-01-24T05:43:09.162Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP_GctMaker/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.cfg"}}}
23 Jan 2021 21:43:09,276 INFO : Sent POST request to https://api.clue.io/api/psp
23 Jan 2021 21:43:09,279 INFO : Checking status of job 600d08ed1dd2560011c085dc
23 Jan 2021 21:43:09,408 INFO : Status: Waiting_To_Download
23 Jan 2021 21:43:29,411 INFO : Checking status of job 600d08ed1dd2560011c085dc
23 Jan 2021 21:43:29,696 INFO : Status: created LVL 3 GCT
23 Jan 2021 21:43:49,699 INFO : Checking status of job 600d08ed1dd2560011c085dc
23 Jan 2021 21:43:49,989 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
23 Jan 2021 21:43:49,990 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
23 Jan 2021 21:43:49,991 INFO : Finished running LINCS PSP pipeline.
23 Jan 2021 21:43:49,992 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'