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Running LINCS pipeline on PSP for: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23

GCP

Job Status

Created: 2019-11-22 11:19:21
Modified: 2020-06-01 17:07:59
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP/@files/LincsPSP_LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2019-11-22_11-19-21.log
Files: LincsPSP_LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2019-11-22_11-19-21.log
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Log File


22 Nov 2019 11:19:21,917 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
22 Nov 2019 11:19:21,917 INFO : =======================================
22 Nov 2019 11:26:03,426 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
22 Nov 2019 11:26:03,427 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
22 Nov 2019 11:26:03,427 INFO : Submitting job for runId: 78681, name: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
22 Nov 2019 11:26:03,430 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
22 Nov 2019 11:26:03,555 INFO : Job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23exists.
22 Nov 2019 11:26:03,555 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2
22 Nov 2019 11:26:03,676 INFO : Job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2exists.
22 Nov 2019 11:26:03,676 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_3
22 Nov 2019 11:26:03,792 INFO : PSP job name: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_3
22 Nov 2019 11:26:03,793 INFO : Sending JSON:
22 Nov 2019 11:26:03,793 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_3",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=78681&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL3.gct"
  }}
}
22 Nov 2019 11:26:03,793 INFO : Sending POST request to https://api.clue.io/api/psp
22 Nov 2019 11:26:03,966 INFO : Response code - 200
22 Nov 2019 11:26:03,967 INFO : Response from server: {"name":"LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_3","assay":"GCP","status":"Waiting_To_Download","id":"5dd8364b6174be0019044809","created":"2019-11-22T19:26:03.860Z","last_modified":"2019-11-22T19:26:03.860Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=78681&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.cfg"}}}
22 Nov 2019 11:26:03,967 INFO : Sent POST request to https://api.clue.io/api/psp
22 Nov 2019 11:26:03,970 INFO : Checking status of job 5dd8364b6174be0019044809
22 Nov 2019 11:26:04,084 INFO : Status: Waiting_To_Download
22 Nov 2019 11:26:24,085 INFO : Checking status of job 5dd8364b6174be0019044809
22 Nov 2019 11:26:24,373 INFO : Status: created LVL 3 GCT
22 Nov 2019 11:26:44,374 INFO : Checking status of job 5dd8364b6174be0019044809
22 Nov 2019 11:26:44,739 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
22 Nov 2019 11:26:44,739 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
22 Nov 2019 11:26:44,739 INFO : Finished running LINCS PSP pipeline.
22 Nov 2019 11:26:44,740 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'