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Running LINCS pipeline on PSP for: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51

GCP

Job Status

Created: 2019-11-22 11:15:15
Modified: 2020-06-01 17:07:59
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP/@files/LincsPSP_LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2019-11-22_11-15-15.log
Files: LincsPSP_LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2019-11-22_11-15-15.log
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Log File


22 Nov 2019 11:15:15,530 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
22 Nov 2019 11:15:15,530 INFO : =======================================
22 Nov 2019 11:21:16,919 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
22 Nov 2019 11:21:16,920 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
22 Nov 2019 11:21:16,920 INFO : Submitting job for runId: 78679, name: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
22 Nov 2019 11:21:16,923 INFO : Looking for existing job with name LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51
22 Nov 2019 11:21:17,204 INFO : Job with name LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51exists.
22 Nov 2019 11:21:17,204 INFO : Looking for existing job with name LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2
22 Nov 2019 11:21:17,317 INFO : PSP job name: LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2
22 Nov 2019 11:21:17,318 INFO : Sending JSON:
22 Nov 2019 11:21:17,318 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=78679&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL3.gct"
  }}
}
22 Nov 2019 11:21:17,319 INFO : Sending POST request to https://api.clue.io/api/psp
22 Nov 2019 11:21:17,516 INFO : Response code - 200
22 Nov 2019 11:21:17,516 INFO : Response from server: {"name":"LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_2","assay":"GCP","status":"Waiting_To_Download","id":"5dd8352d6174be0019044806","created":"2019-11-22T19:21:17.378Z","last_modified":"2019-11-22T19:21:17.378Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=78679&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.cfg"}}}
22 Nov 2019 11:21:17,517 INFO : Sent POST request to https://api.clue.io/api/psp
22 Nov 2019 11:21:17,519 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:21:17,633 INFO : Status: Waiting_To_Download
22 Nov 2019 11:21:37,634 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:21:37,900 INFO : Status: created LVL2 GCT
22 Nov 2019 11:21:57,901 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:21:58,195 INFO : Status: created LVL2 GCT
22 Nov 2019 11:22:18,196 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:22:18,470 INFO : Status: created LVL2 GCT
22 Nov 2019 11:22:38,470 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:22:38,842 INFO : Status: created LVL2 GCT
22 Nov 2019 11:22:58,843 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:22:59,128 INFO : Status: created LVL2 GCT
22 Nov 2019 11:23:19,129 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:23:19,400 INFO : Status: created LVL2 GCT
22 Nov 2019 11:23:39,401 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:23:39,663 INFO : Status: created LVL2 GCT
22 Nov 2019 11:23:59,664 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:24:00,021 INFO : Status: created LVL2 GCT
22 Nov 2019 11:24:20,022 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:24:20,311 INFO : Status: created LVL2 GCT
22 Nov 2019 11:24:40,312 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:24:40,581 INFO : Status: created LVL2 GCT
22 Nov 2019 11:25:00,581 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:25:00,866 INFO : Status: created LVL 3 GCT
22 Nov 2019 11:25:20,866 INFO : Checking status of job 5dd8352d6174be0019044806
22 Nov 2019 11:25:21,242 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
22 Nov 2019 11:25:21,243 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
22 Nov 2019 11:25:21,243 INFO : Finished running LINCS PSP pipeline.
22 Nov 2019 11:25:21,243 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'