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Running LINCS pipeline on PSP for: LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14

GCP

Job Status

Created: 2019-08-16 16:08:59
Modified: 2020-06-01 17:07:59
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14
File Path: /data/labkey/files/LINCS/Publications/Touchstone_2/GCP/@files/LincsPSP_LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_2019-08-16_16-08-58.log
Files: LincsPSP_LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_2019-08-16_16-08-58.log
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Log File


16 Aug 2019 16:08:59,179 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14
16 Aug 2019 16:08:59,180 INFO : =======================================
16 Aug 2019 16:13:30,972 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Aug 2019 16:13:30,987 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14
16 Aug 2019 16:13:30,988 INFO : Submitting job for runId: 69068, name: LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14
16 Aug 2019 16:13:30,991 INFO : Looking for existing job with name LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14
16 Aug 2019 16:13:31,103 INFO : Job with name LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14exists.
16 Aug 2019 16:13:31,103 INFO : Looking for existing job with name LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_2
16 Aug 2019 16:13:31,213 INFO : PSP job name: LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_2
16 Aug 2019 16:13:31,214 INFO : Sending JSON:
16 Aug 2019 16:13:31,214 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=69068&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_LVL3.gct"
  }}
}
16 Aug 2019 16:13:31,214 INFO : Sending POST request to https://api.clue.io/api/psp
16 Aug 2019 16:13:31,413 INFO : Response code - 200
16 Aug 2019 16:13:31,413 INFO : Response from server: {"name":"LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_2","assay":"GCP","status":"Waiting_To_Download","id":"5d57389b544166e8be58565c","created":"2019-08-16T23:13:31.281Z","last_modified":"2019-08-16T23:13:31.281Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/Publications/Touchstone_2/GCP/runGCTReportApi.view?runId=69068&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/Publications/Touchstone_2/GCP/%40files/GCT/LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14.cfg"}}}
16 Aug 2019 16:13:31,414 INFO : Sent POST request to https://api.clue.io/api/psp
16 Aug 2019 16:13:31,416 INFO : Checking status of job 5d57389b544166e8be58565c
16 Aug 2019 16:13:31,529 INFO : Status: Waiting_To_Download
16 Aug 2019 16:13:51,530 INFO : Checking status of job 5d57389b544166e8be58565c
16 Aug 2019 16:13:51,786 INFO : Status: created LVL 3 GCT
16 Aug 2019 16:14:11,787 INFO : Checking status of job 5d57389b544166e8be58565c
16 Aug 2019 16:14:12,118 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 16:14:12,118 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Aug 2019 16:14:12,119 INFO : Finished running LINCS PSP pipeline.
16 Aug 2019 16:14:12,119 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'